miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 32674 0.71 0.235729
Target:  5'- cGCGCGUGcGCGcuUCGGCaaccGCGUacagcgcacggauAGCCg -3'
miRNA:   3'- aCGCGCAC-CGCcuAGCCG----UGCA-------------UCGG- -5'
28028 5' -59 NC_005887.1 + 16478 0.7 0.242509
Target:  5'- cGCGCGgcaggauccGGCGGGcuggUCGGCgAUGUcgcaGGCCg -3'
miRNA:   3'- aCGCGCa--------CCGCCU----AGCCG-UGCA----UCGG- -5'
28028 5' -59 NC_005887.1 + 41939 0.7 0.255252
Target:  5'- --aGCG-GGCGGcgCGGCGCGUcuucgcGGCg -3'
miRNA:   3'- acgCGCaCCGCCuaGCCGUGCA------UCGg -5'
28028 5' -59 NC_005887.1 + 28109 0.7 0.261827
Target:  5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3'
miRNA:   3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5'
28028 5' -59 NC_005887.1 + 2598 0.7 0.267861
Target:  5'- -aCGCGgacaaGGCGGAcaaaaacauguacUC-GCACGUGGCCg -3'
miRNA:   3'- acGCGCa----CCGCCU-------------AGcCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 28336 0.69 0.282378
Target:  5'- gGCGCGccGGCGGuugcggaGGCGCGcGGCg -3'
miRNA:   3'- aCGCGCa-CCGCCuag----CCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 18407 0.69 0.31174
Target:  5'- gGUGCGUGcGCaGA-CGGCcGCGaGGCCg -3'
miRNA:   3'- aCGCGCAC-CGcCUaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 18917 0.68 0.319433
Target:  5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3'
miRNA:   3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 32414 0.68 0.327268
Target:  5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3'
miRNA:   3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 33043 0.68 0.332837
Target:  5'- gUGUGCGUcGGCGuuUCGGUgcccguaaccugcgGCGUcGCCg -3'
miRNA:   3'- -ACGCGCA-CCGCcuAGCCG--------------UGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 12433 0.68 0.33444
Target:  5'- gUGCGCGaGGCccg-CGGCAUGUgggagugGGCCg -3'
miRNA:   3'- -ACGCGCaCCGccuaGCCGUGCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 36924 0.68 0.335244
Target:  5'- gGCGCGUGGuCGcgccGGUCGcUGCGgcGCCg -3'
miRNA:   3'- aCGCGCACC-GC----CUAGCcGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 13900 0.68 0.335244
Target:  5'- gUGCGCGUcGGCauucgUGGCACGUAcGCg -3'
miRNA:   3'- -ACGCGCA-CCGccua-GCCGUGCAU-CGg -5'
28028 5' -59 NC_005887.1 + 35120 0.68 0.335244
Target:  5'- aGgGCGggGcGCGGAUCGGaaucCGgcGCCa -3'
miRNA:   3'- aCgCGCa-C-CGCCUAGCCgu--GCauCGG- -5'
28028 5' -59 NC_005887.1 + 11397 0.68 0.335244
Target:  5'- aGCGC-UGGCGGc-CGGCGCc--GCCa -3'
miRNA:   3'- aCGCGcACCGCCuaGCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 38109 0.68 0.335244
Target:  5'- cUGCGUGcGGCcGAgcgUCGGCGCG-AGCa -3'
miRNA:   3'- -ACGCGCaCCGcCU---AGCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 12064 0.68 0.343362
Target:  5'- cGCGC-UGcaGCaGGUCGGCACGUcGCUc -3'
miRNA:   3'- aCGCGcAC--CGcCUAGCCGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 25512 0.68 0.343362
Target:  5'- gGCGCGgcgGGUGG--CGGCAuaauCGUcGCCg -3'
miRNA:   3'- aCGCGCa--CCGCCuaGCCGU----GCAuCGG- -5'
28028 5' -59 NC_005887.1 + 39918 0.68 0.35162
Target:  5'- cGCGCGaGGUGucauucGUCGGCGCGggcuucGCCu -3'
miRNA:   3'- aCGCGCaCCGCc-----UAGCCGUGCau----CGG- -5'
28028 5' -59 NC_005887.1 + 24900 0.68 0.35162
Target:  5'- uUGCGCGU--CGGAUUcgGGC-CGUAGCg -3'
miRNA:   3'- -ACGCGCAccGCCUAG--CCGuGCAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.