Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 5' | -59 | NC_005887.1 | + | 30525 | 0.67 | 0.413276 |
Target: 5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3' miRNA: 3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 38230 | 0.67 | 0.404067 |
Target: 5'- uUGCGCGUGGcCGGGaUGGU-CG-AGCg -3' miRNA: 3'- -ACGCGCACC-GCCUaGCCGuGCaUCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 293 | 0.67 | 0.404067 |
Target: 5'- -cUGCGUGGCGuGAUCaGCGa--GGCCg -3' miRNA: 3'- acGCGCACCGC-CUAGcCGUgcaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26209 | 0.67 | 0.394988 |
Target: 5'- gGCGCGccggugguUGGCGGGgugguugcgcgCGGCGCagcGCCa -3' miRNA: 3'- aCGCGC--------ACCGCCUa----------GCCGUGcauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32717 | 0.67 | 0.386042 |
Target: 5'- cGCGCGguucacccacGGCGGGguagcgCGGCgcucGCGUGcgcGCCg -3' miRNA: 3'- aCGCGCa---------CCGCCUa-----GCCG----UGCAU---CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 12312 | 0.67 | 0.37723 |
Target: 5'- gGCGCucgccuaugaggGUGGCG--UCGGCGCGUucGUCa -3' miRNA: 3'- aCGCG------------CACCGCcuAGCCGUGCAu-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 27383 | 0.67 | 0.37723 |
Target: 5'- cUGCGCGgcguaGGCGucGAguugCGGCGCGUcguacGGCa -3' miRNA: 3'- -ACGCGCa----CCGC--CUa---GCCGUGCA-----UCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 38506 | 0.67 | 0.376357 |
Target: 5'- cGCuCGUGGCGGGUaucggucUGGCGgGUAGg- -3' miRNA: 3'- aCGcGCACCGCCUA-------GCCGUgCAUCgg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 30940 | 0.67 | 0.376357 |
Target: 5'- aGCGCGcucGGCGGugauGUCGGCgcccGCGUAcgugaggaacuucGCCc -3' miRNA: 3'- aCGCGCa--CCGCC----UAGCCG----UGCAU-------------CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 41956 | 0.67 | 0.368555 |
Target: 5'- gUGCucGCGUGGUGcGugcgCGGCGCGcucGCCu -3' miRNA: 3'- -ACG--CGCACCGC-Cua--GCCGUGCau-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 13399 | 0.67 | 0.368555 |
Target: 5'- gGCGC--GGCGGAcgUCGGCGgcaAGCCg -3' miRNA: 3'- aCGCGcaCCGCCU--AGCCGUgcaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 21069 | 0.68 | 0.360018 |
Target: 5'- gGCGCcggugugggGUGGCguuggcuugaacGGuAUCGGCGCGgucGCCg -3' miRNA: 3'- aCGCG---------CACCG------------CC-UAGCCGUGCau-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 15201 | 0.68 | 0.360018 |
Target: 5'- cGCGCccGUGGCcGuUCGGCcGCGUGaucGCCg -3' miRNA: 3'- aCGCG--CACCGcCuAGCCG-UGCAU---CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 39918 | 0.68 | 0.35162 |
Target: 5'- cGCGCGaGGUGucauucGUCGGCGCGggcuucGCCu -3' miRNA: 3'- aCGCGCaCCGCc-----UAGCCGUGCau----CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 24900 | 0.68 | 0.35162 |
Target: 5'- uUGCGCGU--CGGAUUcgGGC-CGUAGCg -3' miRNA: 3'- -ACGCGCAccGCCUAG--CCGuGCAUCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 12064 | 0.68 | 0.343362 |
Target: 5'- cGCGC-UGcaGCaGGUCGGCACGUcGCUc -3' miRNA: 3'- aCGCGcAC--CGcCUAGCCGUGCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 25512 | 0.68 | 0.343362 |
Target: 5'- gGCGCGgcgGGUGG--CGGCAuaauCGUcGCCg -3' miRNA: 3'- aCGCGCa--CCGCCuaGCCGU----GCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 11397 | 0.68 | 0.335244 |
Target: 5'- aGCGC-UGGCGGc-CGGCGCc--GCCa -3' miRNA: 3'- aCGCGcACCGCCuaGCCGUGcauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 35120 | 0.68 | 0.335244 |
Target: 5'- aGgGCGggGcGCGGAUCGGaaucCGgcGCCa -3' miRNA: 3'- aCgCGCa-C-CGCCUAGCCgu--GCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 13900 | 0.68 | 0.335244 |
Target: 5'- gUGCGCGUcGGCauucgUGGCACGUAcGCg -3' miRNA: 3'- -ACGCGCA-CCGccua-GCCGUGCAU-CGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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