Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 5' | -59 | NC_005887.1 | + | 35120 | 0.68 | 0.335244 |
Target: 5'- aGgGCGggGcGCGGAUCGGaaucCGgcGCCa -3' miRNA: 3'- aCgCGCa-C-CGCCUAGCCgu--GCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 36924 | 0.68 | 0.335244 |
Target: 5'- gGCGCGUGGuCGcgccGGUCGcUGCGgcGCCg -3' miRNA: 3'- aCGCGCACC-GC----CUAGCcGUGCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 12433 | 0.68 | 0.33444 |
Target: 5'- gUGCGCGaGGCccg-CGGCAUGUgggagugGGCCg -3' miRNA: 3'- -ACGCGCaCCGccuaGCCGUGCA-------UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 33043 | 0.68 | 0.332837 |
Target: 5'- gUGUGCGUcGGCGuuUCGGUgcccguaaccugcgGCGUcGCCg -3' miRNA: 3'- -ACGCGCA-CCGCcuAGCCG--------------UGCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32414 | 0.68 | 0.327268 |
Target: 5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3' miRNA: 3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 18917 | 0.68 | 0.319433 |
Target: 5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3' miRNA: 3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 18407 | 0.69 | 0.31174 |
Target: 5'- gGUGCGUGcGCaGA-CGGCcGCGaGGCCg -3' miRNA: 3'- aCGCGCAC-CGcCUaGCCG-UGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 28336 | 0.69 | 0.282378 |
Target: 5'- gGCGCGccGGCGGuugcggaGGCGCGcGGCg -3' miRNA: 3'- aCGCGCa-CCGCCuag----CCGUGCaUCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 2598 | 0.7 | 0.267861 |
Target: 5'- -aCGCGgacaaGGCGGAcaaaaacauguacUC-GCACGUGGCCg -3' miRNA: 3'- acGCGCa----CCGCCU-------------AGcCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 28109 | 0.7 | 0.261827 |
Target: 5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3' miRNA: 3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 41939 | 0.7 | 0.255252 |
Target: 5'- --aGCG-GGCGGcgCGGCGCGUcuucgcGGCg -3' miRNA: 3'- acgCGCaCCGCCuaGCCGUGCA------UCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 16478 | 0.7 | 0.242509 |
Target: 5'- cGCGCGgcaggauccGGCGGGcuggUCGGCgAUGUcgcaGGCCg -3' miRNA: 3'- aCGCGCa--------CCGCCU----AGCCG-UGCA----UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32674 | 0.71 | 0.235729 |
Target: 5'- cGCGCGUGcGCGcuUCGGCaaccGCGUacagcgcacggauAGCCg -3' miRNA: 3'- aCGCGCAC-CGCcuAGCCG----UGCA-------------UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 6960 | 0.71 | 0.2303 |
Target: 5'- gUGCGCG-GGCGcAUCGaGCAUG-AGCUg -3' miRNA: 3'- -ACGCGCaCCGCcUAGC-CGUGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 17677 | 0.71 | 0.2303 |
Target: 5'- cGCGCuUGGCGacGUCGGCACGauguucgugacGGCCg -3' miRNA: 3'- aCGCGcACCGCc-UAGCCGUGCa----------UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 9782 | 0.71 | 0.223809 |
Target: 5'- aUGCGCGUcacgcacuGGCGcGAgaacgCGGUgaaagccuggcacACGUGGCCg -3' miRNA: 3'- -ACGCGCA--------CCGC-CUa----GCCG-------------UGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 2687 | 0.71 | 0.218614 |
Target: 5'- gUGCGCGUgaagcguacgGGCGGcaagCGGC-CG-AGCCg -3' miRNA: 3'- -ACGCGCA----------CCGCCua--GCCGuGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26828 | 0.71 | 0.218614 |
Target: 5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3' miRNA: 3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 14531 | 0.71 | 0.218043 |
Target: 5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3' miRNA: 3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 22602 | 0.73 | 0.172144 |
Target: 5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3' miRNA: 3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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