miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 12312 0.67 0.37723
Target:  5'- gGCGCucgccuaugaggGUGGCG--UCGGCGCGUucGUCa -3'
miRNA:   3'- aCGCG------------CACCGCcuAGCCGUGCAu-CGG- -5'
28028 5' -59 NC_005887.1 + 12433 0.68 0.33444
Target:  5'- gUGCGCGaGGCccg-CGGCAUGUgggagugGGCCg -3'
miRNA:   3'- -ACGCGCaCCGccuaGCCGUGCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 12890 0.78 0.066625
Target:  5'- gUGCGCGa-GCuGAUCGGCACGgcgAGCCa -3'
miRNA:   3'- -ACGCGCacCGcCUAGCCGUGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 13399 0.67 0.368555
Target:  5'- gGCGC--GGCGGAcgUCGGCGgcaAGCCg -3'
miRNA:   3'- aCGCGcaCCGCCU--AGCCGUgcaUCGG- -5'
28028 5' -59 NC_005887.1 + 13611 0.66 0.471125
Target:  5'- cGCuGC-UGGCaGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCG-CGcACCGcCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 13900 0.68 0.335244
Target:  5'- gUGCGCGUcGGCauucgUGGCACGUAcGCg -3'
miRNA:   3'- -ACGCGCA-CCGccua-GCCGUGCAU-CGg -5'
28028 5' -59 NC_005887.1 + 14531 0.71 0.218043
Target:  5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3'
miRNA:   3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5'
28028 5' -59 NC_005887.1 + 14652 0.66 0.429226
Target:  5'- aGUGCuacgcGGCGaGGUaCGGCACGUgaugcagacgaucaAGCCg -3'
miRNA:   3'- aCGCGca---CCGC-CUA-GCCGUGCA--------------UCGG- -5'
28028 5' -59 NC_005887.1 + 15017 0.77 0.07907
Target:  5'- cUGCGCGUGGCGcaGUCG--ACGUGGCCg -3'
miRNA:   3'- -ACGCGCACCGCc-UAGCcgUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 15201 0.68 0.360018
Target:  5'- cGCGCccGUGGCcGuUCGGCcGCGUGaucGCCg -3'
miRNA:   3'- aCGCG--CACCGcCuAGCCG-UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 16478 0.7 0.242509
Target:  5'- cGCGCGgcaggauccGGCGGGcuggUCGGCgAUGUcgcaGGCCg -3'
miRNA:   3'- aCGCGCa--------CCGCCU----AGCCG-UGCA----UCGG- -5'
28028 5' -59 NC_005887.1 + 17522 0.66 0.432079
Target:  5'- aUGCGCacgcucgagGGCGGcaugacgucgGUCGGCGCGUA-CUg -3'
miRNA:   3'- -ACGCGca-------CCGCC----------UAGCCGUGCAUcGG- -5'
28028 5' -59 NC_005887.1 + 17677 0.71 0.2303
Target:  5'- cGCGCuUGGCGacGUCGGCACGauguucgugacGGCCg -3'
miRNA:   3'- aCGCGcACCGCc-UAGCCGUGCa----------UCGG- -5'
28028 5' -59 NC_005887.1 + 18102 0.76 0.096399
Target:  5'- cGC-CGUGGCuGcugcCGGCACGUGGCCa -3'
miRNA:   3'- aCGcGCACCGcCua--GCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 18407 0.69 0.31174
Target:  5'- gGUGCGUGcGCaGA-CGGCcGCGaGGCCg -3'
miRNA:   3'- aCGCGCAC-CGcCUaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 18917 0.68 0.319433
Target:  5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3'
miRNA:   3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 19189 0.66 0.432079
Target:  5'- gGCGCG-GGCguGGAgacaggCGGCGCGguuacgacgAGCg -3'
miRNA:   3'- aCGCGCaCCG--CCUa-----GCCGUGCa--------UCGg -5'
28028 5' -59 NC_005887.1 + 21069 0.68 0.360018
Target:  5'- gGCGCcggugugggGUGGCguuggcuugaacGGuAUCGGCGCGgucGCCg -3'
miRNA:   3'- aCGCG---------CACCG------------CC-UAGCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 22602 0.73 0.172144
Target:  5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3'
miRNA:   3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 23241 0.66 0.461192
Target:  5'- cGCGaGcGGCGGcgGUCGGCGCGcaaaaGGCg -3'
miRNA:   3'- aCGCgCaCCGCC--UAGCCGUGCa----UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.