miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 30940 0.67 0.376357
Target:  5'- aGCGCGcucGGCGGugauGUCGGCgcccGCGUAcgugaggaacuucGCCc -3'
miRNA:   3'- aCGCGCa--CCGCC----UAGCCG----UGCAU-------------CGG- -5'
28028 5' -59 NC_005887.1 + 30525 0.67 0.413276
Target:  5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3'
miRNA:   3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5'
28028 5' -59 NC_005887.1 + 29763 0.66 0.432079
Target:  5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3'
miRNA:   3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 28336 0.69 0.282378
Target:  5'- gGCGCGccGGCGGuugcggaGGCGCGcGGCg -3'
miRNA:   3'- aCGCGCa-CCGCCuag----CCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 28109 0.7 0.261827
Target:  5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3'
miRNA:   3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5'
28028 5' -59 NC_005887.1 + 27383 0.67 0.37723
Target:  5'- cUGCGCGgcguaGGCGucGAguugCGGCGCGUcguacGGCa -3'
miRNA:   3'- -ACGCGCa----CCGC--CUa---GCCGUGCA-----UCGg -5'
28028 5' -59 NC_005887.1 + 27256 0.66 0.447474
Target:  5'- cGCGCGccGGCccgcgucgccaauGAUCGGCACGacuuccauGCCg -3'
miRNA:   3'- aCGCGCa-CCGc------------CUAGCCGUGCau------CGG- -5'
28028 5' -59 NC_005887.1 + 26828 0.71 0.218614
Target:  5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3'
miRNA:   3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5'
28028 5' -59 NC_005887.1 + 26394 0.75 0.110916
Target:  5'- cUGCGacaGcGGCGug-CGGCGCGUGGCCg -3'
miRNA:   3'- -ACGCg--CaCCGCcuaGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 26209 0.67 0.394988
Target:  5'- gGCGCGccggugguUGGCGGGgugguugcgcgCGGCGCagcGCCa -3'
miRNA:   3'- aCGCGC--------ACCGCCUa----------GCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 25512 0.68 0.343362
Target:  5'- gGCGCGgcgGGUGG--CGGCAuaauCGUcGCCg -3'
miRNA:   3'- aCGCGCa--CCGCCuaGCCGU----GCAuCGG- -5'
28028 5' -59 NC_005887.1 + 25354 1.12 0.000201
Target:  5'- cUGCGCGUGGCGGAUCGGCACGUAGCCg -3'
miRNA:   3'- -ACGCGCACCGCCUAGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 24900 0.68 0.35162
Target:  5'- uUGCGCGU--CGGAUUcgGGC-CGUAGCg -3'
miRNA:   3'- -ACGCGCAccGCCUAG--CCGuGCAUCGg -5'
28028 5' -59 NC_005887.1 + 23241 0.66 0.461192
Target:  5'- cGCGaGcGGCGGcgGUCGGCGCGcaaaaGGCg -3'
miRNA:   3'- aCGCgCaCCGCC--UAGCCGUGCa----UCGg -5'
28028 5' -59 NC_005887.1 + 22602 0.73 0.172144
Target:  5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3'
miRNA:   3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 21069 0.68 0.360018
Target:  5'- gGCGCcggugugggGUGGCguuggcuugaacGGuAUCGGCGCGgucGCCg -3'
miRNA:   3'- aCGCG---------CACCG------------CC-UAGCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 19189 0.66 0.432079
Target:  5'- gGCGCG-GGCguGGAgacaggCGGCGCGguuacgacgAGCg -3'
miRNA:   3'- aCGCGCaCCG--CCUa-----GCCGUGCa--------UCGg -5'
28028 5' -59 NC_005887.1 + 18917 0.68 0.319433
Target:  5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3'
miRNA:   3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 18407 0.69 0.31174
Target:  5'- gGUGCGUGcGCaGA-CGGCcGCGaGGCCg -3'
miRNA:   3'- aCGCGCAC-CGcCUaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 18102 0.76 0.096399
Target:  5'- cGC-CGUGGCuGcugcCGGCACGUGGCCa -3'
miRNA:   3'- aCGcGCACCGcCua--GCCGUGCAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.