miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 41956 0.67 0.368555
Target:  5'- gUGCucGCGUGGUGcGugcgCGGCGCGcucGCCu -3'
miRNA:   3'- -ACG--CGCACCGC-Cua--GCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 41939 0.7 0.255252
Target:  5'- --aGCG-GGCGGcgCGGCGCGUcuucgcGGCg -3'
miRNA:   3'- acgCGCaCCGCCuaGCCGUGCA------UCGg -5'
28028 5' -59 NC_005887.1 + 41805 0.66 0.471125
Target:  5'- cGCGCuGUaucCGGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCGCG-CAcc-GCCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 39918 0.68 0.35162
Target:  5'- cGCGCGaGGUGucauucGUCGGCGCGggcuucGCCu -3'
miRNA:   3'- aCGCGCaCCGCc-----UAGCCGUGCau----CGG- -5'
28028 5' -59 NC_005887.1 + 39431 0.66 0.421675
Target:  5'- uUGCGCagcuUGGCGG--CGGCGuCGUucgcggcGGCCg -3'
miRNA:   3'- -ACGCGc---ACCGCCuaGCCGU-GCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 38632 0.75 0.123978
Target:  5'- uUGCGCGgaucGCGG-UCGGCGCGcGGCUc -3'
miRNA:   3'- -ACGCGCac--CGCCuAGCCGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 38506 0.67 0.376357
Target:  5'- cGCuCGUGGCGGGUaucggucUGGCGgGUAGg- -3'
miRNA:   3'- aCGcGCACCGCCUA-------GCCGUgCAUCgg -5'
28028 5' -59 NC_005887.1 + 38230 0.67 0.404067
Target:  5'- uUGCGCGUGGcCGGGaUGGU-CG-AGCg -3'
miRNA:   3'- -ACGCGCACC-GCCUaGCCGuGCaUCGg -5'
28028 5' -59 NC_005887.1 + 38109 0.68 0.335244
Target:  5'- cUGCGUGcGGCcGAgcgUCGGCGCG-AGCa -3'
miRNA:   3'- -ACGCGCaCCGcCU---AGCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 36924 0.68 0.335244
Target:  5'- gGCGCGUGGuCGcgccGGUCGcUGCGgcGCCg -3'
miRNA:   3'- aCGCGCACC-GC----CUAGCcGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 36890 0.78 0.074692
Target:  5'- cUGCGuCGUGGUGGAUgCGGCAgGaguGCCa -3'
miRNA:   3'- -ACGC-GCACCGCCUA-GCCGUgCau-CGG- -5'
28028 5' -59 NC_005887.1 + 35333 0.66 0.461192
Target:  5'- cGCGCGccgcGGCGGc-CGGCcACG-AGCUu -3'
miRNA:   3'- aCGCGCa---CCGCCuaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 35120 0.68 0.335244
Target:  5'- aGgGCGggGcGCGGAUCGGaaucCGgcGCCa -3'
miRNA:   3'- aCgCGCa-C-CGCCUAGCCgu--GCauCGG- -5'
28028 5' -59 NC_005887.1 + 33043 0.68 0.332837
Target:  5'- gUGUGCGUcGGCGuuUCGGUgcccguaaccugcgGCGUcGCCg -3'
miRNA:   3'- -ACGCGCA-CCGCcuAGCCG--------------UGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 32782 0.74 0.146263
Target:  5'- gGCuCGUGcGCaGGAUCGGCGCGc-GCCg -3'
miRNA:   3'- aCGcGCAC-CG-CCUAGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 32717 0.67 0.386042
Target:  5'- cGCGCGguucacccacGGCGGGguagcgCGGCgcucGCGUGcgcGCCg -3'
miRNA:   3'- aCGCGCa---------CCGCCUa-----GCCG----UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 32674 0.71 0.235729
Target:  5'- cGCGCGUGcGCGcuUCGGCaaccGCGUacagcgcacggauAGCCg -3'
miRNA:   3'- aCGCGCAC-CGCcuAGCCG----UGCA-------------UCGG- -5'
28028 5' -59 NC_005887.1 + 32414 0.68 0.327268
Target:  5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3'
miRNA:   3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 31386 0.66 0.461192
Target:  5'- cGCGCucGGCGuagCGGUGCGU-GCCg -3'
miRNA:   3'- aCGCGcaCCGCcuaGCCGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 31009 0.66 0.422615
Target:  5'- -uCGCGUGGCG---CGGCGCa-GGCCa -3'
miRNA:   3'- acGCGCACCGCcuaGCCGUGcaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.