miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 21069 0.68 0.360018
Target:  5'- gGCGCcggugugggGUGGCguuggcuugaacGGuAUCGGCGCGgucGCCg -3'
miRNA:   3'- aCGCG---------CACCG------------CC-UAGCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 28109 0.7 0.261827
Target:  5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3'
miRNA:   3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5'
28028 5' -59 NC_005887.1 + 2598 0.7 0.267861
Target:  5'- -aCGCGgacaaGGCGGAcaaaaacauguacUC-GCACGUGGCCg -3'
miRNA:   3'- acGCGCa----CCGCCU-------------AGcCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 32414 0.68 0.327268
Target:  5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3'
miRNA:   3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 11397 0.68 0.335244
Target:  5'- aGCGC-UGGCGGc-CGGCGCc--GCCa -3'
miRNA:   3'- aCGCGcACCGCCuaGCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 13900 0.68 0.335244
Target:  5'- gUGCGCGUcGGCauucgUGGCACGUAcGCg -3'
miRNA:   3'- -ACGCGCA-CCGccua-GCCGUGCAU-CGg -5'
28028 5' -59 NC_005887.1 + 35120 0.68 0.335244
Target:  5'- aGgGCGggGcGCGGAUCGGaaucCGgcGCCa -3'
miRNA:   3'- aCgCGCa-C-CGCCUAGCCgu--GCauCGG- -5'
28028 5' -59 NC_005887.1 + 25512 0.68 0.343362
Target:  5'- gGCGCGgcgGGUGG--CGGCAuaauCGUcGCCg -3'
miRNA:   3'- aCGCGCa--CCGCCuaGCCGU----GCAuCGG- -5'
28028 5' -59 NC_005887.1 + 12064 0.68 0.343362
Target:  5'- cGCGC-UGcaGCaGGUCGGCACGUcGCUc -3'
miRNA:   3'- aCGCGcAC--CGcCUAGCCGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 16478 0.7 0.242509
Target:  5'- cGCGCGgcaggauccGGCGGGcuggUCGGCgAUGUcgcaGGCCg -3'
miRNA:   3'- aCGCGCa--------CCGCCU----AGCCG-UGCA----UCGG- -5'
28028 5' -59 NC_005887.1 + 32674 0.71 0.235729
Target:  5'- cGCGCGUGcGCGcuUCGGCaaccGCGUacagcgcacggauAGCCg -3'
miRNA:   3'- aCGCGCAC-CGCcuAGCCG----UGCA-------------UCGG- -5'
28028 5' -59 NC_005887.1 + 17677 0.71 0.2303
Target:  5'- cGCGCuUGGCGacGUCGGCACGauguucgugacGGCCg -3'
miRNA:   3'- aCGCGcACCGCc-UAGCCGUGCa----------UCGG- -5'
28028 5' -59 NC_005887.1 + 11095 0.77 0.081349
Target:  5'- -cCGCGUGGCGcAUCGGCugGUgcgcgcgaagcuGGCCg -3'
miRNA:   3'- acGCGCACCGCcUAGCCGugCA------------UCGG- -5'
28028 5' -59 NC_005887.1 + 7108 0.77 0.083692
Target:  5'- cGCGCGUggucuaacgaGGCGGggCGGCgcuGCGgcGCCg -3'
miRNA:   3'- aCGCGCA----------CCGCCuaGCCG---UGCauCGG- -5'
28028 5' -59 NC_005887.1 + 32782 0.74 0.146263
Target:  5'- gGCuCGUGcGCaGGAUCGGCGCGc-GCCg -3'
miRNA:   3'- aCGcGCAC-CG-CCUAGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 9270 0.73 0.167563
Target:  5'- cUGUGCacGGCGG-UCGGCACGgcgacGCCg -3'
miRNA:   3'- -ACGCGcaCCGCCuAGCCGUGCau---CGG- -5'
28028 5' -59 NC_005887.1 + 22602 0.73 0.172144
Target:  5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3'
miRNA:   3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 14531 0.71 0.218043
Target:  5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3'
miRNA:   3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5'
28028 5' -59 NC_005887.1 + 2687 0.71 0.218614
Target:  5'- gUGCGCGUgaagcguacgGGCGGcaagCGGC-CG-AGCCg -3'
miRNA:   3'- -ACGCGCA----------CCGCCua--GCCGuGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 26828 0.71 0.218614
Target:  5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3'
miRNA:   3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.