miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 41805 0.66 0.471125
Target:  5'- cGCGCuGUaucCGGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCGCG-CAcc-GCCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 18917 0.68 0.319433
Target:  5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3'
miRNA:   3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 28336 0.69 0.282378
Target:  5'- gGCGCGccGGCGGuugcggaGGCGCGcGGCg -3'
miRNA:   3'- aCGCGCa-CCGCCuag----CCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 25354 1.12 0.000201
Target:  5'- cUGCGCGUGGCGGAUCGGCACGUAGCCg -3'
miRNA:   3'- -ACGCGCACCGCCUAGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 14652 0.66 0.429226
Target:  5'- aGUGCuacgcGGCGaGGUaCGGCACGUgaugcagacgaucaAGCCg -3'
miRNA:   3'- aCGCGca---CCGC-CUA-GCCGUGCA--------------UCGG- -5'
28028 5' -59 NC_005887.1 + 39431 0.66 0.421675
Target:  5'- uUGCGCagcuUGGCGG--CGGCGuCGUucgcggcGGCCg -3'
miRNA:   3'- -ACGCGc---ACCGCCuaGCCGU-GCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 26209 0.67 0.394988
Target:  5'- gGCGCGccggugguUGGCGGGgugguugcgcgCGGCGCagcGCCa -3'
miRNA:   3'- aCGCGC--------ACCGCCUa----------GCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 27383 0.67 0.37723
Target:  5'- cUGCGCGgcguaGGCGucGAguugCGGCGCGUcguacGGCa -3'
miRNA:   3'- -ACGCGCa----CCGC--CUa---GCCGUGCA-----UCGg -5'
28028 5' -59 NC_005887.1 + 39918 0.68 0.35162
Target:  5'- cGCGCGaGGUGucauucGUCGGCGCGggcuucGCCu -3'
miRNA:   3'- aCGCGCaCCGCc-----UAGCCGUGCau----CGG- -5'
28028 5' -59 NC_005887.1 + 33043 0.68 0.332837
Target:  5'- gUGUGCGUcGGCGuuUCGGUgcccguaaccugcgGCGUcGCCg -3'
miRNA:   3'- -ACGCGCA-CCGCcuAGCCG--------------UGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 36924 0.68 0.335244
Target:  5'- gGCGCGUGGuCGcgccGGUCGcUGCGgcGCCg -3'
miRNA:   3'- aCGCGCACC-GC----CUAGCcGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 15201 0.68 0.360018
Target:  5'- cGCGCccGUGGCcGuUCGGCcGCGUGaucGCCg -3'
miRNA:   3'- aCGCG--CACCGcCuAGCCG-UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 10118 0.66 0.45137
Target:  5'- cGCgGCaggcaaagGUGGCGGGUuugaugacgagCGGCACcucUGGCCg -3'
miRNA:   3'- aCG-CG--------CACCGCCUA-----------GCCGUGc--AUCGG- -5'
28028 5' -59 NC_005887.1 + 38109 0.68 0.335244
Target:  5'- cUGCGUGcGGCcGAgcgUCGGCGCG-AGCa -3'
miRNA:   3'- -ACGCGCaCCGcCU---AGCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 7014 0.66 0.441665
Target:  5'- aGCuCGUGGcCGGccgccgCGGCGCGcGGCa -3'
miRNA:   3'- aCGcGCACC-GCCua----GCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 12312 0.67 0.37723
Target:  5'- gGCGCucgccuaugaggGUGGCG--UCGGCGCGUucGUCa -3'
miRNA:   3'- aCGCG------------CACCGCcuAGCCGUGCAu-CGG- -5'
28028 5' -59 NC_005887.1 + 12433 0.68 0.33444
Target:  5'- gUGCGCGaGGCccg-CGGCAUGUgggagugGGCCg -3'
miRNA:   3'- -ACGCGCaCCGccuaGCCGUGCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 18407 0.69 0.31174
Target:  5'- gGUGCGUGcGCaGA-CGGCcGCGaGGCCg -3'
miRNA:   3'- aCGCGCAC-CGcCUaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 29763 0.66 0.432079
Target:  5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3'
miRNA:   3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 1988 0.67 0.413276
Target:  5'- cGCGCGacGGCGGcaCGGCcGCGcucgacGGCCa -3'
miRNA:   3'- aCGCGCa-CCGCCuaGCCG-UGCa-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.