miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 29763 0.66 0.432079
Target:  5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3'
miRNA:   3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 18102 0.76 0.096399
Target:  5'- cGC-CGUGGCuGcugcCGGCACGUGGCCa -3'
miRNA:   3'- aCGcGCACCGcCua--GCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 18917 0.68 0.319433
Target:  5'- gGCGgGaUGGCGGG-CGGCuGCGacgAGCUg -3'
miRNA:   3'- aCGCgC-ACCGCCUaGCCG-UGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 7014 0.66 0.441665
Target:  5'- aGCuCGUGGcCGGccgccgCGGCGCGcGGCa -3'
miRNA:   3'- aCGcGCACC-GCCua----GCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 11813 0.73 0.163092
Target:  5'- cUGCuGCGUGGCGucUCGGC-CGacGGCCg -3'
miRNA:   3'- -ACG-CGCACCGCcuAGCCGuGCa-UCGG- -5'
28028 5' -59 NC_005887.1 + 15017 0.77 0.07907
Target:  5'- cUGCGCGUGGCGcaGUCG--ACGUGGCCg -3'
miRNA:   3'- -ACGCGCACCGCc-UAGCcgUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 26394 0.75 0.110916
Target:  5'- cUGCGacaGcGGCGug-CGGCGCGUGGCCg -3'
miRNA:   3'- -ACGCg--CaCCGCcuaGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 10118 0.66 0.45137
Target:  5'- cGCgGCaggcaaagGUGGCGGGUuugaugacgagCGGCACcucUGGCCg -3'
miRNA:   3'- aCG-CG--------CACCGCCUA-----------GCCGUGc--AUCGG- -5'
28028 5' -59 NC_005887.1 + 41805 0.66 0.471125
Target:  5'- cGCGCuGUaucCGGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCGCG-CAcc-GCCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 14652 0.66 0.429226
Target:  5'- aGUGCuacgcGGCGaGGUaCGGCACGUgaugcagacgaucaAGCCg -3'
miRNA:   3'- aCGCGca---CCGC-CUA-GCCGUGCA--------------UCGG- -5'
28028 5' -59 NC_005887.1 + 15201 0.68 0.360018
Target:  5'- cGCGCccGUGGCcGuUCGGCcGCGUGaucGCCg -3'
miRNA:   3'- aCGCG--CACCGcCuAGCCG-UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 14531 0.71 0.218043
Target:  5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3'
miRNA:   3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5'
28028 5' -59 NC_005887.1 + 1488 0.66 0.422615
Target:  5'- gGCGUGcGGCGcucGcgCGGCGCG--GCCg -3'
miRNA:   3'- aCGCGCaCCGC---CuaGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 30525 0.67 0.413276
Target:  5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3'
miRNA:   3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5'
28028 5' -59 NC_005887.1 + 38230 0.67 0.404067
Target:  5'- uUGCGCGUGGcCGGGaUGGU-CG-AGCg -3'
miRNA:   3'- -ACGCGCACC-GCCUaGCCGuGCaUCGg -5'
28028 5' -59 NC_005887.1 + 293 0.67 0.404067
Target:  5'- -cUGCGUGGCGuGAUCaGCGa--GGCCg -3'
miRNA:   3'- acGCGCACCGC-CUAGcCGUgcaUCGG- -5'
28028 5' -59 NC_005887.1 + 32717 0.67 0.386042
Target:  5'- cGCGCGguucacccacGGCGGGguagcgCGGCgcucGCGUGcgcGCCg -3'
miRNA:   3'- aCGCGCa---------CCGCCUa-----GCCG----UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 28109 0.7 0.261827
Target:  5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3'
miRNA:   3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5'
28028 5' -59 NC_005887.1 + 2598 0.7 0.267861
Target:  5'- -aCGCGgacaaGGCGGAcaaaaacauguacUC-GCACGUGGCCg -3'
miRNA:   3'- acGCGCa----CCGCCU-------------AGcCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 32414 0.68 0.327268
Target:  5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3'
miRNA:   3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.