Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 27250 | 0.69 | 0.347246 |
Target: 5'- cUgCAucGCGCGCCGGCCcGCGUCGc -3' miRNA: 3'- aAgGUcaUGCGCGGCUGGcUGCAGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 3471 | 0.67 | 0.438905 |
Target: 5'- gUUCGGgccugGCGCGCUGAUgaucgagcaCGACGUCGg -3' miRNA: 3'- aAGGUCa----UGCGCGGCUG---------GCUGCAGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 21579 | 0.67 | 0.438905 |
Target: 5'- aUCCAGUAC-UGCCGGCau-CGUCGg -3' miRNA: 3'- aAGGUCAUGcGCGGCUGgcuGCAGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 14600 | 0.66 | 0.479248 |
Target: 5'- -gUCGGUACGCGUaCGGCCGucggcgcCGUCGa -3' miRNA: 3'- aaGGUCAUGCGCG-GCUGGCu------GCAGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 14025 | 0.66 | 0.489617 |
Target: 5'- -aCCGccgGCGCGCCG-CCGGCG-CAg -3' miRNA: 3'- aaGGUca-UGCGCGGCuGGCUGCaGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 13192 | 0.66 | 0.50009 |
Target: 5'- gUCgAGcagGC-CGCCGGCCGACGUg-- -3' miRNA: 3'- aAGgUCa--UGcGCGGCUGGCUGCAgua -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 33204 | 0.66 | 0.50009 |
Target: 5'- gUCCAGaugaACGCGCCGcACUGGCacucgGUCGc -3' miRNA: 3'- aAGGUCa---UGCGCGGC-UGGCUG-----CAGUa -5' |
|||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 31318 | 0.73 | 0.186038 |
Target: 5'- -aCCGGUggucacgucccACGUGCCGACCGGgcCGUCGUc -3' miRNA: 3'- aaGGUCA-----------UGCGCGGCUGGCU--GCAGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home