Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 32128 | 0.68 | 0.373264 |
Target: 5'- -aUCAG-ACGCGCCGuCCGGCG-CGg -3' miRNA: 3'- aaGGUCaUGCGCGGCuGGCUGCaGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 33204 | 0.66 | 0.50009 |
Target: 5'- gUCCAGaugaACGCGCCGcACUGGCacucgGUCGc -3' miRNA: 3'- aAGGUCa---UGCGCGGC-UGGCUG-----CAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 35479 | 0.74 | 0.149095 |
Target: 5'- -aUCAGcgccUGCGCGuuGGCCGACGUCGc -3' miRNA: 3'- aaGGUC----AUGCGCggCUGGCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 35549 | 0.68 | 0.355773 |
Target: 5'- -gCCAGU-CGCGCagcgugaGGCCGAUGUCc- -3' miRNA: 3'- aaGGUCAuGCGCGg------CUGGCUGCAGua -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 36870 | 0.71 | 0.256447 |
Target: 5'- -gCCGGUGCuGCGCCaucGGCCuGCGUCGUg -3' miRNA: 3'- aaGGUCAUG-CGCGG---CUGGcUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 37559 | 0.67 | 0.429125 |
Target: 5'- aUCCgcgAGcACGgccuCGCCGGCUGGCGUCAg -3' miRNA: 3'- aAGG---UCaUGC----GCGGCUGGCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 40154 | 0.67 | 0.457832 |
Target: 5'- -aUCGGUuuGCGCugcccgaucaccgCGGCCGGCGUCAg -3' miRNA: 3'- aaGGUCAugCGCG-------------GCUGGCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 41813 | 0.71 | 0.256447 |
Target: 5'- aUCCGGcgcgGCGCGCggCGGCCGACG-CGUu -3' miRNA: 3'- aAGGUCa---UGCGCG--GCUGGCUGCaGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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