Results 21 - 40 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28031 | 5' | -60 | NC_005887.1 | + | 28041 | 0.67 | 0.333309 |
Target: 5'- uGUCGGCGucGGCCUGCGCuugcggguucagCGUGaGCGu -3' miRNA: 3'- -CGGCCGC--UCGGGCGCGua----------GUACaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 40866 | 0.67 | 0.344618 |
Target: 5'- cGCCGcGCGAGCgCCGCacgccgucgGCGUCGg--GCu -3' miRNA: 3'- -CGGC-CGCUCG-GGCG---------CGUAGUacaCGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 33260 | 0.67 | 0.344618 |
Target: 5'- cGCCGGU--GCCCGCGCuggCA--UGCa -3' miRNA: 3'- -CGGCCGcuCGGGCGCGua-GUacACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 18114 | 0.67 | 0.352864 |
Target: 5'- uGCCGGCacguGGCCagcaGCGCAUCAaacgGCu -3' miRNA: 3'- -CGGCCGc---UCGGg---CGCGUAGUaca-CGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 30977 | 0.67 | 0.360403 |
Target: 5'- uCCGGCugcgcuGAcGCCCGCGCugAUCAggcucagUGUGCu -3' miRNA: 3'- cGGCCG------CU-CGGGCGCG--UAGU-------ACACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 26127 | 0.67 | 0.361247 |
Target: 5'- gGCCGGCGuaucgaucguGaCCUGCGUGUCcgGUcGCa -3' miRNA: 3'- -CGGCCGCu---------C-GGGCGCGUAGuaCA-CGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 34122 | 0.67 | 0.361247 |
Target: 5'- uGCCGuucuCGAugcugaacaGCCCGCGCGUgUcgGUGCGc -3' miRNA: 3'- -CGGCc---GCU---------CGGGCGCGUA-GuaCACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 32438 | 0.67 | 0.364639 |
Target: 5'- gGCCGGCGgcgaucagguugcgcAGCCacuGCGCGgc--GUGCGg -3' miRNA: 3'- -CGGCCGC---------------UCGGg--CGCGUaguaCACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 40859 | 0.67 | 0.368054 |
Target: 5'- aCCGGCGAagccGCCgCGCGCGUCGaagaagaaacGCGa -3' miRNA: 3'- cGGCCGCU----CGG-GCGCGUAGUaca-------CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 30205 | 0.67 | 0.336513 |
Target: 5'- cGCCGGCcAGCCaCGCcGCGUCGcG-GCc -3' miRNA: 3'- -CGGCCGcUCGG-GCG-CGUAGUaCaCGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 32331 | 0.68 | 0.283696 |
Target: 5'- uGCCaGCGcGgCCGCGCGUgAUGUGg- -3' miRNA: 3'- -CGGcCGCuCgGGCGCGUAgUACACgc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 33190 | 0.68 | 0.313036 |
Target: 5'- gGCCGGaCGAGCCCguccagaugaacGCGCcgCAcUG-GCa -3' miRNA: 3'- -CGGCC-GCUCGGG------------CGCGuaGU-ACaCGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 27080 | 0.68 | 0.313036 |
Target: 5'- cGCCGGCGGacGCucgCCGCGCAgCAc-UGCGg -3' miRNA: 3'- -CGGCCGCU--CG---GGCGCGUaGUacACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 19505 | 0.68 | 0.305491 |
Target: 5'- uGCCGGCGAGCauCgGCGCAg-----GCGa -3' miRNA: 3'- -CGGCCGCUCG--GgCGCGUaguacaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 16532 | 0.68 | 0.283696 |
Target: 5'- cGCCGGCgccGAGUggGCGCGUCAgcaacucGUGCa -3' miRNA: 3'- -CGGCCG---CUCGggCGCGUAGUa------CACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 28282 | 0.68 | 0.313036 |
Target: 5'- aUCGGCacgccGAGCgCGCGCAgcgUCGUG-GCGa -3' miRNA: 3'- cGGCCG-----CUCGgGCGCGU---AGUACaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 10058 | 0.68 | 0.298086 |
Target: 5'- cGCCGGCuGGCCCGaCG-AUCGccccGUGUGg -3' miRNA: 3'- -CGGCCGcUCGGGC-GCgUAGUa---CACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 26872 | 0.68 | 0.298086 |
Target: 5'- cGCgCGGCcAGCUCGaaCGCGUCuugGUGCGc -3' miRNA: 3'- -CG-GCCGcUCGGGC--GCGUAGua-CACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 8601 | 0.69 | 0.27671 |
Target: 5'- cGCUGGCGAGCUCuCGCcgUugcucgGUGCa -3' miRNA: 3'- -CGGCCGCUCGGGcGCGuaGua----CACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 647 | 0.69 | 0.256575 |
Target: 5'- cGCgCGGCGAGCgCaCGCGCAUgaccgccgacCAgGUGCu -3' miRNA: 3'- -CG-GCCGCUCG-G-GCGCGUA----------GUaCACGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home