Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28031 | 5' | -60 | NC_005887.1 | + | 41950 | 0.74 | 0.125064 |
Target: 5'- cCCGGCGuGCUCGCGUGgugCGUGcGCGg -3' miRNA: 3'- cGGCCGCuCGGGCGCGUa--GUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 41617 | 0.72 | 0.155658 |
Target: 5'- gGCCGGCGcGGCCCGUgaggaucugcuGCGUC-UGcGCGg -3' miRNA: 3'- -CGGCCGC-UCGGGCG-----------CGUAGuACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 37445 | 0.71 | 0.182895 |
Target: 5'- aGCgCGGCGcuuGCCUGCGCGguuugCA-GUGCGc -3' miRNA: 3'- -CG-GCCGCu--CGGGCGCGUa----GUaCACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26082 | 0.71 | 0.203323 |
Target: 5'- cGUCaGCG-GCCCGCGCGgcguuUCAUG-GCGu -3' miRNA: 3'- -CGGcCGCuCGGGCGCGU-----AGUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 19505 | 0.68 | 0.305491 |
Target: 5'- uGCCGGCGAGCauCgGCGCAg-----GCGa -3' miRNA: 3'- -CGGCCGCUCG--GgCGCGUaguacaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 16532 | 0.68 | 0.283696 |
Target: 5'- cGCCGGCgccGAGUggGCGCGUCAgcaacucGUGCa -3' miRNA: 3'- -CGGCCG---CUCGggCGCGUAGUa------CACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 8601 | 0.69 | 0.27671 |
Target: 5'- cGCUGGCGAGCUCuCGCcgUugcucgGUGCa -3' miRNA: 3'- -CGGCCGCUCGGGcGCGuaGua----CACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 647 | 0.69 | 0.256575 |
Target: 5'- cGCgCGGCGAGCgCaCGCGCAUgaccgccgacCAgGUGCu -3' miRNA: 3'- -CG-GCCGCUCG-G-GCGCGUA----------GUaCACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 41192 | 0.69 | 0.249498 |
Target: 5'- cGCCuGGCugcauccGA-CCCGCGCGUCGUcGUGCc -3' miRNA: 3'- -CGG-CCG-------CUcGGGCGCGUAGUA-CACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 4792 | 0.7 | 0.225702 |
Target: 5'- aGCCGGCGAGgCCGUGC-UCGcGgaucucGCGc -3' miRNA: 3'- -CGGCCGCUCgGGCGCGuAGUaCa-----CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26127 | 0.67 | 0.361247 |
Target: 5'- gGCCGGCGuaucgaucguGaCCUGCGUGUCcgGUcGCa -3' miRNA: 3'- -CGGCCGCu---------C-GGGCGCGUAGuaCA-CGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 29830 | 0.66 | 0.378427 |
Target: 5'- uGUCGGCGAGCuUCGC-CuUCGUcUGCGg -3' miRNA: 3'- -CGGCCGCUCG-GGCGcGuAGUAcACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 27364 | 0.66 | 0.38722 |
Target: 5'- cGCCuGCG-GCCUGCGCggCcUGcGCGg -3' miRNA: 3'- -CGGcCGCuCGGGCGCGuaGuACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 17396 | 0.66 | 0.396146 |
Target: 5'- gGCCGcGCGcaaggcGGCCCGCGCG-CAccgcGUcGCGa -3' miRNA: 3'- -CGGC-CGC------UCGGGCGCGUaGUa---CA-CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 5371 | 0.66 | 0.405204 |
Target: 5'- cGCCGGCGAGCucgacCCGCGCGa-------- -3' miRNA: 3'- -CGGCCGCUCG-----GGCGCGUaguacacgc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 30143 | 0.66 | 0.414392 |
Target: 5'- uCCGGCGcGCCCGgCGCggCGcUGUccuucGCGg -3' miRNA: 3'- cGGCCGCuCGGGC-GCGuaGU-ACA-----CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 2321 | 0.66 | 0.423706 |
Target: 5'- gGCCGGCcgccucGAG-CCGCGC--CAUGaUGCGc -3' miRNA: 3'- -CGGCCG------CUCgGGCGCGuaGUAC-ACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 9608 | 0.66 | 0.423706 |
Target: 5'- cGCCGGCgcgcacgcGAGCgCCGCGCuaccccgcCGUGgGUGa -3' miRNA: 3'- -CGGCCG--------CUCG-GGCGCGua------GUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 20545 | 0.66 | 0.423706 |
Target: 5'- cCCGGC-AGCgCCGCGgaCGUCGUGUugaugccgGCGa -3' miRNA: 3'- cGGCCGcUCG-GGCGC--GUAGUACA--------CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 24391 | 1.1 | 0.000202 |
Target: 5'- uGCCGGCGAGCCCGCGCAUCAUGUGCGa -3' miRNA: 3'- -CGGCCGCUCGGGCGCGUAGUACACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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