miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 22582 0.75 0.097358
Target:  5'- uGCUGGuCGGGCUCGCa-AUCGUGUGCGu -3'
miRNA:   3'- -CGGCC-GCUCGGGCGcgUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 23677 0.66 0.405204
Target:  5'- uCCGGCGcGCgCGaaCGCAUCGaaauUGUGCu -3'
miRNA:   3'- cGGCCGCuCGgGC--GCGUAGU----ACACGc -5'
28031 5' -60 NC_005887.1 + 24214 0.74 0.108874
Target:  5'- cGUCGGCG-GCCCGCGCuucgCcgGUuGCGu -3'
miRNA:   3'- -CGGCCGCuCGGGCGCGua--GuaCA-CGC- -5'
28031 5' -60 NC_005887.1 + 24391 1.1 0.000202
Target:  5'- uGCCGGCGAGCCCGCGCAUCAUGUGCGa -3'
miRNA:   3'- -CGGCCGCUCGGGCGCGUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 25028 0.66 0.414392
Target:  5'- cGCCGGCcAGCCgguaGCGCAgaaccCAUGccGCa -3'
miRNA:   3'- -CGGCCGcUCGGg---CGCGUa----GUACa-CGc -5'
28031 5' -60 NC_005887.1 + 26082 0.71 0.203323
Target:  5'- cGUCaGCG-GCCCGCGCGgcguuUCAUG-GCGu -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGU-----AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 26127 0.67 0.361247
Target:  5'- gGCCGGCGuaucgaucguGaCCUGCGUGUCcgGUcGCa -3'
miRNA:   3'- -CGGCCGCu---------C-GGGCGCGUAGuaCA-CGc -5'
28031 5' -60 NC_005887.1 + 26418 0.7 0.225702
Target:  5'- gGCCGGCGcaucgauuccGGCCCGCGCGgaacgCAgGU-CGg -3'
miRNA:   3'- -CGGCCGC----------UCGGGCGCGUa----GUaCAcGC- -5'
28031 5' -60 NC_005887.1 + 26686 0.7 0.219918
Target:  5'- aGCUGGuCGAGCUCgGCGCG-CAUcUGCGa -3'
miRNA:   3'- -CGGCC-GCUCGGG-CGCGUaGUAcACGC- -5'
28031 5' -60 NC_005887.1 + 26727 0.71 0.192872
Target:  5'- aUCGGCGAGCCCG-GCcgCcUGcUGCGc -3'
miRNA:   3'- cGGCCGCUCGGGCgCGuaGuAC-ACGC- -5'
28031 5' -60 NC_005887.1 + 26872 0.68 0.298086
Target:  5'- cGCgCGGCcAGCUCGaaCGCGUCuugGUGCGc -3'
miRNA:   3'- -CG-GCCGcUCGGGC--GCGUAGua-CACGC- -5'
28031 5' -60 NC_005887.1 + 26988 0.78 0.056778
Target:  5'- uGCCGGUGAGguucacccaUCCGUGCAccuUCGUGUGCGc -3'
miRNA:   3'- -CGGCCGCUC---------GGGCGCGU---AGUACACGC- -5'
28031 5' -60 NC_005887.1 + 27080 0.68 0.313036
Target:  5'- cGCCGGCGGacGCucgCCGCGCAgCAc-UGCGg -3'
miRNA:   3'- -CGGCCGCU--CG---GGCGCGUaGUacACGC- -5'
28031 5' -60 NC_005887.1 + 27364 0.66 0.38722
Target:  5'- cGCCuGCG-GCCUGCGCggCcUGcGCGg -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGuaGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 27984 0.66 0.405204
Target:  5'- cGCCGGCucGGGCCgaauCGCGuCGUCGgccgGCGu -3'
miRNA:   3'- -CGGCCG--CUCGG----GCGC-GUAGUaca-CGC- -5'
28031 5' -60 NC_005887.1 + 28041 0.67 0.333309
Target:  5'- uGUCGGCGucGGCCUGCGCuugcggguucagCGUGaGCGu -3'
miRNA:   3'- -CGGCCGC--UCGGGCGCGua----------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 28282 0.68 0.313036
Target:  5'- aUCGGCacgccGAGCgCGCGCAgcgUCGUG-GCGa -3'
miRNA:   3'- cGGCCG-----CUCGgGCGCGU---AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 29830 0.66 0.378427
Target:  5'- uGUCGGCGAGCuUCGC-CuUCGUcUGCGg -3'
miRNA:   3'- -CGGCCGCUCG-GGCGcGuAGUAcACGC- -5'
28031 5' -60 NC_005887.1 + 30143 0.66 0.414392
Target:  5'- uCCGGCGcGCCCGgCGCggCGcUGUccuucGCGg -3'
miRNA:   3'- cGGCCGCuCGGGC-GCGuaGU-ACA-----CGC- -5'
28031 5' -60 NC_005887.1 + 30205 0.67 0.336513
Target:  5'- cGCCGGCcAGCCaCGCcGCGUCGcG-GCc -3'
miRNA:   3'- -CGGCCGcUCGG-GCG-CGUAGUaCaCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.