Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 3' | -53 | NC_005887.1 | + | 816 | 0.79 | 0.139231 |
Target: 5'- uGCgCGCCgagcgCCUCGCGGAUCuUGCCg -3' miRNA: 3'- uUGaGCGGaa---GGAGCGCUUAGuACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 1266 | 0.69 | 0.554843 |
Target: 5'- -cCUCuGCCUcgUCCacgagcgCGCGGAUCGUGUCc -3' miRNA: 3'- uuGAG-CGGA--AGGa------GCGCUUAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 3966 | 0.66 | 0.758219 |
Target: 5'- cGACcCGCCgUUgCUCGCGAAcgaggaggCGUGCUu -3' miRNA: 3'- -UUGaGCGG-AAgGAGCGCUUa-------GUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 4806 | 0.66 | 0.73652 |
Target: 5'- uGCUCGCggaUCUCGCGcAGUUcUGCCg -3' miRNA: 3'- uUGAGCGgaaGGAGCGC-UUAGuACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 6852 | 0.67 | 0.691855 |
Target: 5'- cGACgUGUCggaCCUCGCGAcgUcgGCCa -3' miRNA: 3'- -UUGaGCGGaa-GGAGCGCUuaGuaCGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 14470 | 0.71 | 0.436772 |
Target: 5'- aGGCgucgUGUCgggCCUCGCGcaGAUCGUGCCc -3' miRNA: 3'- -UUGa---GCGGaa-GGAGCGC--UUAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 18555 | 0.67 | 0.669094 |
Target: 5'- cGGCggCGCCggCUUCGCGGGcgaCAUGCUc -3' miRNA: 3'- -UUGa-GCGGaaGGAGCGCUUa--GUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 23171 | 0.73 | 0.368671 |
Target: 5'- uGGCUUGCCUUUCUCGuCGcgcucgcGAUCAcgGCCg -3' miRNA: 3'- -UUGAGCGGAAGGAGC-GC-------UUAGUa-CGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 24170 | 1.11 | 0.000815 |
Target: 5'- gAACUCGCCUUCCUCGCGAAUCAUGCCg -3' miRNA: 3'- -UUGAGCGGAAGGAGCGCUUAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 25499 | 0.68 | 0.611737 |
Target: 5'- ---gCGCCgcgguacaCCUCGCGGAUgAUGUCg -3' miRNA: 3'- uugaGCGGaa------GGAGCGCUUAgUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 25861 | 0.66 | 0.747434 |
Target: 5'- cGACaUCGCCgaccagCC-CGcCGGAUCcUGCCg -3' miRNA: 3'- -UUG-AGCGGaa----GGaGC-GCUUAGuACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 26119 | 0.67 | 0.691855 |
Target: 5'- cGCUCGCCggCCg-GCGuaucGAUCGUGaCCu -3' miRNA: 3'- uUGAGCGGaaGGagCGC----UUAGUAC-GG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 26151 | 0.7 | 0.488836 |
Target: 5'- cGCUCGaCgacgUCCUCGUcGAUCGUGUCg -3' miRNA: 3'- uUGAGCgGa---AGGAGCGcUUAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 26374 | 0.66 | 0.758219 |
Target: 5'- -uCUUGCCagcgUUCCagUCGCGGAUCGucUGCg -3' miRNA: 3'- uuGAGCGG----AAGG--AGCGCUUAGU--ACGg -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 27796 | 0.67 | 0.6805 |
Target: 5'- ----gGUCUUCCgcgCGCGA--CAUGCCg -3' miRNA: 3'- uugagCGGAAGGa--GCGCUuaGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 29457 | 0.71 | 0.439806 |
Target: 5'- uGGCUCGCCgugCCgaucagcUCGCGcacggcaccugccacGGUCGUGCCu -3' miRNA: 3'- -UUGAGCGGaa-GG-------AGCGC---------------UUAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 29713 | 0.7 | 0.4996 |
Target: 5'- cACUCGCCgucgCgUCGCaGGAUCAcgcGCCg -3' miRNA: 3'- uUGAGCGGaa--GgAGCG-CUUAGUa--CGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 29837 | 0.72 | 0.378735 |
Target: 5'- gAGCuUCGCCUUCgUCuGCGGAUCcagcGCCg -3' miRNA: 3'- -UUG-AGCGGAAGgAG-CGCUUAGua--CGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 30264 | 0.81 | 0.107028 |
Target: 5'- cGCUUGCCgUCCggCGCGAcgAUCGUGCCg -3' miRNA: 3'- uUGAGCGGaAGGa-GCGCU--UAGUACGG- -5' |
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28032 | 3' | -53 | NC_005887.1 | + | 33116 | 0.68 | 0.622066 |
Target: 5'- cGGCUUGCgUUCCUCGCcguugcgucgguaGAAgcagccgacCGUGCCg -3' miRNA: 3'- -UUGAGCGgAAGGAGCG-------------CUUa--------GUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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