miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 41932 0.7 0.20727
Target:  5'- cGGCUcGCaGCUGaGCUGCCcgGCGUGCUCg -3'
miRNA:   3'- uCUGA-CG-CGGUaCGACGG--CGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 40434 0.69 0.218477
Target:  5'- uGAC-GcCGCCcgGCUGCCgaaagaacGCGUaGCCCu -3'
miRNA:   3'- uCUGaC-GCGGuaCGACGG--------CGCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 40348 0.66 0.351971
Target:  5'- uGGACUG-GCCGUcgaGCgcgGCCGUGccGCUCg -3'
miRNA:   3'- -UCUGACgCGGUA---CGa--CGGCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 40147 0.68 0.248771
Target:  5'- -cGCUgcGCGCCGcGCUcGCCGCGUGUg- -3'
miRNA:   3'- ucUGA--CGCGGUaCGA-CGGCGCACGgg -5'
28033 5' -60.3 NC_005887.1 + 40132 0.67 0.327518
Target:  5'- cGACcggaUGCGCCA-GCcGCCcaucgguuuGCGcUGCCCg -3'
miRNA:   3'- uCUG----ACGCGGUaCGaCGG---------CGC-ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 39444 0.7 0.186341
Target:  5'- cGGCgGCGUCGUucGCggcgGCCGaCGUGUCCg -3'
miRNA:   3'- uCUGaCGCGGUA--CGa---CGGC-GCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 38487 0.67 0.296907
Target:  5'- cGGGCUGcCGCCGUacacaucgucGgUGCCGaCGUagaagcGCCCg -3'
miRNA:   3'- -UCUGAC-GCGGUA----------CgACGGC-GCA------CGGG- -5'
28033 5' -60.3 NC_005887.1 + 36922 0.72 0.150018
Target:  5'- cGGGCgcguggucGCGCCGgucGCUGCgGCGccGCCCg -3'
miRNA:   3'- -UCUGa-------CGCGGUa--CGACGgCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 36839 0.67 0.28961
Target:  5'- -uGCUGCgGCCgGUGCUGCgGCcgGUGCUg -3'
miRNA:   3'- ucUGACG-CGG-UACGACGgCG--CACGGg -5'
28033 5' -60.3 NC_005887.1 + 35891 0.68 0.278229
Target:  5'- cGAuCUGCGCCcgGuCuucggacagacggaaUGCCGCGUGUugCCg -3'
miRNA:   3'- uCU-GACGCGGuaC-G---------------ACGGCGCACG--GG- -5'
28033 5' -60.3 NC_005887.1 + 35863 0.68 0.282455
Target:  5'- cGGAUUGCGCUcgGCagacaCCGCGacgccgcGCCCg -3'
miRNA:   3'- -UCUGACGCGGuaCGac---GGCGCa------CGGG- -5'
28033 5' -60.3 NC_005887.1 + 34365 0.67 0.311928
Target:  5'- gAGACgaGCGCCccgcguaucagaGUGCgGCCGgGcgcgagGCCCg -3'
miRNA:   3'- -UCUGa-CGCGG------------UACGaCGGCgCa-----CGGG- -5'
28033 5' -60.3 NC_005887.1 + 33944 0.68 0.261829
Target:  5'- cGACgGCGCUcgGCgagcacGUCGCGUGCg- -3'
miRNA:   3'- uCUGaCGCGGuaCGa-----CGGCGCACGgg -5'
28033 5' -60.3 NC_005887.1 + 32763 0.72 0.138141
Target:  5'- cGGCgcGCGCCAUGCaGCCGgcuCGUGCgCa -3'
miRNA:   3'- uCUGa-CGCGGUACGaCGGC---GCACGgG- -5'
28033 5' -60.3 NC_005887.1 + 31383 0.66 0.351971
Target:  5'- cGAC-GCGCUcgGCguaGCggUGCGUGCCg -3'
miRNA:   3'- uCUGaCGCGGuaCGa--CG--GCGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 31191 0.67 0.304347
Target:  5'- cGGGCaUGCGCgCGUagauuucggGC-GCCGCGUGCUUc -3'
miRNA:   3'- -UCUG-ACGCG-GUA---------CGaCGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 30286 0.66 0.377689
Target:  5'- cGAC-GUGCCGaccUGCUGCagCGCGgcGCCUg -3'
miRNA:   3'- uCUGaCGCGGU---ACGACG--GCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 30145 0.66 0.335527
Target:  5'- cGGC-GCGCCcgGC-GCgGCGcUGUCCu -3'
miRNA:   3'- uCUGaCGCGGuaCGaCGgCGC-ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 29970 0.66 0.343678
Target:  5'- uGACguuguuUGCGCgGUGCUGCUcgGCcUGCCa -3'
miRNA:   3'- uCUG------ACGCGgUACGACGG--CGcACGGg -5'
28033 5' -60.3 NC_005887.1 + 29643 0.67 0.304346
Target:  5'- -uGCUGCGCgAccaGCgUGCgCGCGUGaCCCu -3'
miRNA:   3'- ucUGACGCGgUa--CG-ACG-GCGCAC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.