miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 20538 0.66 0.385647
Target:  5'- cGGC-GCGCCcgGCagcGCCGCGgacgucguguugaUGCCg -3'
miRNA:   3'- uCUGaCGCGGuaCGa--CGGCGC-------------ACGGg -5'
28033 5' -60.3 NC_005887.1 + 21275 0.67 0.28961
Target:  5'- cGGCgGCGgCGUaugcGCUGCUGgCGUcGCCCa -3'
miRNA:   3'- uCUGaCGCgGUA----CGACGGC-GCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 22540 0.68 0.274746
Target:  5'- -cGCUGCG-CAUGCcGuCCGCGaucgacaUGCCCg -3'
miRNA:   3'- ucUGACGCgGUACGaC-GGCGC-------ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 22601 0.66 0.360404
Target:  5'- cGugUGCGUguggaucGCUGCgCGCGUcGCCUa -3'
miRNA:   3'- uCugACGCGgua----CGACG-GCGCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 22776 0.69 0.224273
Target:  5'- cGACaGCGUgAcGCUGCuCGaCGUGCCUg -3'
miRNA:   3'- uCUGaCGCGgUaCGACG-GC-GCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 23369 1.1 0.000154
Target:  5'- uAGACUGCGCCAUGCUGCCGCGUGCCCu -3'
miRNA:   3'- -UCUGACGCGGUACGACGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 23436 0.67 0.327518
Target:  5'- gAGAUUcggugaGCGCUgcggGCUGCCG-GUGCCg -3'
miRNA:   3'- -UCUGA------CGCGGua--CGACGGCgCACGGg -5'
28033 5' -60.3 NC_005887.1 + 24107 0.67 0.319652
Target:  5'- uGGCccuUG-GCCGUGCUG-CGCGUGUCg -3'
miRNA:   3'- uCUG---ACgCGGUACGACgGCGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 24194 0.7 0.191392
Target:  5'- -cACaGCGUCGUGUUGCCGaCGUGCg- -3'
miRNA:   3'- ucUGaCGCGGUACGACGGC-GCACGgg -5'
28033 5' -60.3 NC_005887.1 + 26397 0.67 0.28961
Target:  5'- cGACaGCGgCGUGC-GgCGCGUGgCCg -3'
miRNA:   3'- uCUGaCGCgGUACGaCgGCGCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 26582 0.7 0.181408
Target:  5'- --uCUGCGCCuucGCgGCCGCG-GCCUu -3'
miRNA:   3'- ucuGACGCGGua-CGaCGGCGCaCGGG- -5'
28033 5' -60.3 NC_005887.1 + 27340 0.68 0.248771
Target:  5'- cGACUGCGCCAcGCgcaGCgGCGcGCa- -3'
miRNA:   3'- uCUGACGCGGUaCGa--CGgCGCaCGgg -5'
28033 5' -60.3 NC_005887.1 + 27647 0.67 0.319652
Target:  5'- -cGCcGCGCCcgGCccgcccGCCGCGacgaGCCCg -3'
miRNA:   3'- ucUGaCGCGGuaCGa-----CGGCGCa---CGGG- -5'
28033 5' -60.3 NC_005887.1 + 27657 0.67 0.327518
Target:  5'- ----cGCGCUGaGCUGCCGCGcGCgCg -3'
miRNA:   3'- ucugaCGCGGUaCGACGGCGCaCGgG- -5'
28033 5' -60.3 NC_005887.1 + 27713 0.72 0.142001
Target:  5'- cAGcACcGCGCCG-GCUGCCGUGagcgcGCCCu -3'
miRNA:   3'- -UC-UGaCGCGGUaCGACGGCGCa----CGGG- -5'
28033 5' -60.3 NC_005887.1 + 28322 0.68 0.282455
Target:  5'- cAGGCUGCGCCGgcgGCgcgccggcgGuuGCGgagGCgCg -3'
miRNA:   3'- -UCUGACGCGGUa--CGa--------CggCGCa--CGgG- -5'
28033 5' -60.3 NC_005887.1 + 28725 0.66 0.35197
Target:  5'- cGGCUGagugcggcCGCCGcGC-GCCGCGcUGCCa -3'
miRNA:   3'- uCUGAC--------GCGGUaCGaCGGCGC-ACGGg -5'
28033 5' -60.3 NC_005887.1 + 29643 0.67 0.304346
Target:  5'- -uGCUGCGCgAccaGCgUGCgCGCGUGaCCCu -3'
miRNA:   3'- ucUGACGCGgUa--CG-ACG-GCGCAC-GGG- -5'
28033 5' -60.3 NC_005887.1 + 29970 0.66 0.343678
Target:  5'- uGACguuguuUGCGCgGUGCUGCUcgGCcUGCCa -3'
miRNA:   3'- uCUG------ACGCGgUACGACGG--CGcACGGg -5'
28033 5' -60.3 NC_005887.1 + 30145 0.66 0.335527
Target:  5'- cGGC-GCGCCcgGC-GCgGCGcUGUCCu -3'
miRNA:   3'- uCUGaCGCGGuaCGaCGgCGC-ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.