Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28033 | 5' | -60.3 | NC_005887.1 | + | 13081 | 0.68 | 0.268565 |
Target: 5'- uGGAacgcgGCGCUcgaucgcggaGUGCUGCaggGCGUGCCg -3' miRNA: 3'- -UCUga---CGCGG----------UACGACGg--CGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 23436 | 0.67 | 0.327518 |
Target: 5'- gAGAUUcggugaGCGCUgcggGCUGCCG-GUGCCg -3' miRNA: 3'- -UCUGA------CGCGGua--CGACGGCgCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 27647 | 0.67 | 0.319652 |
Target: 5'- -cGCcGCGCCcgGCccgcccGCCGCGacgaGCCCg -3' miRNA: 3'- ucUGaCGCGGuaCGa-----CGGCGCa---CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 29643 | 0.67 | 0.304346 |
Target: 5'- -uGCUGCGCgAccaGCgUGCgCGCGUGaCCCu -3' miRNA: 3'- ucUGACGCGgUa--CG-ACG-GCGCAC-GGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 38487 | 0.67 | 0.296907 |
Target: 5'- cGGGCUGcCGCCGUacacaucgucGgUGCCGaCGUagaagcGCCCg -3' miRNA: 3'- -UCUGAC-GCGGUA----------CgACGGC-GCA------CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6410 | 0.67 | 0.296907 |
Target: 5'- cGACUGCGUgAUcaucGCCGUGUGgCCg -3' miRNA: 3'- uCUGACGCGgUAcga-CGGCGCACgGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 16855 | 0.67 | 0.296171 |
Target: 5'- -cGCcGCGCCAUcguccgaGCcGCCGCugcguuGUGCCCa -3' miRNA: 3'- ucUGaCGCGGUA-------CGaCGGCG------CACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 26397 | 0.67 | 0.28961 |
Target: 5'- cGACaGCGgCGUGC-GgCGCGUGgCCg -3' miRNA: 3'- uCUGaCGCgGUACGaCgGCGCACgGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 36839 | 0.67 | 0.28961 |
Target: 5'- -uGCUGCgGCCgGUGCUGCgGCcgGUGCUg -3' miRNA: 3'- ucUGACG-CGG-UACGACGgCG--CACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 40132 | 0.67 | 0.327518 |
Target: 5'- cGACcggaUGCGCCA-GCcGCCcaucgguuuGCGcUGCCCg -3' miRNA: 3'- uCUG----ACGCGGUaCGaCGG---------CGC-ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 30145 | 0.66 | 0.335527 |
Target: 5'- cGGC-GCGCCcgGC-GCgGCGcUGUCCu -3' miRNA: 3'- uCUGaCGCGGuaCGaCGgCGC-ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 361 | 0.66 | 0.343678 |
Target: 5'- uGGGCcGCagGCCGUGCUGCUgauaggcgaGCGcGCCg -3' miRNA: 3'- -UCUGaCG--CGGUACGACGG---------CGCaCGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 23369 | 1.1 | 0.000154 |
Target: 5'- uAGACUGCGCCAUGCUGCCGCGUGCCCu -3' miRNA: 3'- -UCUGACGCGGUACGACGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 744 | 0.66 | 0.377689 |
Target: 5'- cGGGCcGCGCCG-GCcGCCGCaccuggGCCg -3' miRNA: 3'- -UCUGaCGCGGUaCGaCGGCGca----CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 30286 | 0.66 | 0.377689 |
Target: 5'- cGAC-GUGCCGaccUGCUGCagCGCGgcGCCUg -3' miRNA: 3'- uCUGaCGCGGU---ACGACG--GCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6631 | 0.66 | 0.377689 |
Target: 5'- cGACcGCGaCCGaGCUGCaCGCGUGgauCUCg -3' miRNA: 3'- uCUGaCGC-GGUaCGACG-GCGCAC---GGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 18931 | 0.66 | 0.357014 |
Target: 5'- cGGCUGCGacgagcugaucgaCGcGCUGCUGCGgcUGCCa -3' miRNA: 3'- uCUGACGCg------------GUaCGACGGCGC--ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 28725 | 0.66 | 0.35197 |
Target: 5'- cGGCUGagugcggcCGCCGcGC-GCCGCGcUGCCa -3' miRNA: 3'- uCUGAC--------GCGGUaCGaCGGCGC-ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 13953 | 0.66 | 0.35197 |
Target: 5'- cGGCUGCGaCGUGCgcgugacgacaGCCGCGaaGCCg -3' miRNA: 3'- uCUGACGCgGUACGa----------CGGCGCa-CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 29970 | 0.66 | 0.343678 |
Target: 5'- uGACguuguuUGCGCgGUGCUGCUcgGCcUGCCa -3' miRNA: 3'- uCUG------ACGCGgUACGACGG--CGcACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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