Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28033 | 5' | -60.3 | NC_005887.1 | + | 27713 | 0.72 | 0.142001 |
Target: 5'- cAGcACcGCGCCG-GCUGCCGUGagcgcGCCCu -3' miRNA: 3'- -UC-UGaCGCGGUaCGACGGCGCa----CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 36922 | 0.72 | 0.150018 |
Target: 5'- cGGGCgcguggucGCGCCGgucGCUGCgGCGccGCCCg -3' miRNA: 3'- -UCUGa-------CGCGGUa--CGACGgCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 35891 | 0.68 | 0.278229 |
Target: 5'- cGAuCUGCGCCcgGuCuucggacagacggaaUGCCGCGUGUugCCg -3' miRNA: 3'- uCU-GACGCGGuaC-G---------------ACGGCGCACG--GG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 17891 | 0.75 | 0.090764 |
Target: 5'- cGGCcGCGCCAacgGCcugaUGCUGCGUGUCCu -3' miRNA: 3'- uCUGaCGCGGUa--CG----ACGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6765 | 0.68 | 0.27544 |
Target: 5'- aAGuuCUGCaagGCCAag--GCCGUGUGCCCg -3' miRNA: 3'- -UCu-GACG---CGGUacgaCGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 18097 | 0.7 | 0.186341 |
Target: 5'- cGACU-CGCCGuggcUGCUGCCGgcaCGUGgCCa -3' miRNA: 3'- uCUGAcGCGGU----ACGACGGC---GCACgGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 23369 | 1.1 | 0.000154 |
Target: 5'- uAGACUGCGCCAUGCUGCCGCGUGCCCu -3' miRNA: 3'- -UCUGACGCGGUACGACGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 8479 | 0.68 | 0.261829 |
Target: 5'- cGACggaGCGCUGUcgGCUGCCGCaG-GCUCg -3' miRNA: 3'- uCUGa--CGCGGUA--CGACGGCG-CaCGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 1819 | 0.69 | 0.21281 |
Target: 5'- cAGAC--CGUCGUcGCUGCCGCGcGCCg -3' miRNA: 3'- -UCUGacGCGGUA-CGACGGCGCaCGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 26582 | 0.7 | 0.181408 |
Target: 5'- --uCUGCGCCuucGCgGCCGCG-GCCUu -3' miRNA: 3'- ucuGACGCGGua-CGaCGGCGCaCGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 11131 | 0.72 | 0.13814 |
Target: 5'- cGAUcGCGUCGUGCUGaagcaCGCGgcGCCCg -3' miRNA: 3'- uCUGaCGCGGUACGACg----GCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 15110 | 0.68 | 0.282455 |
Target: 5'- cGGC-GCGCgAUGCaguugcGCCGCGaugcGCCCg -3' miRNA: 3'- uCUGaCGCGgUACGa-----CGGCGCa---CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 39444 | 0.7 | 0.186341 |
Target: 5'- cGGCgGCGUCGUucGCggcgGCCGaCGUGUCCg -3' miRNA: 3'- uCUGaCGCGGUA--CGa---CGGC-GCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 19097 | 0.7 | 0.20239 |
Target: 5'- -aGCUGCGCCuuuUGCgcgccgaccgccgccGCuCGCGUGCCg -3' miRNA: 3'- ucUGACGCGGu--ACGa--------------CG-GCGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 40434 | 0.69 | 0.218477 |
Target: 5'- uGAC-GcCGCCcgGCUGCCgaaagaacGCGUaGCCCu -3' miRNA: 3'- uCUGaC-GCGGuaCGACGG--------CGCA-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 22776 | 0.69 | 0.224273 |
Target: 5'- cGACaGCGUgAcGCUGCuCGaCGUGCCUg -3' miRNA: 3'- uCUGaCGCGgUaCGACG-GC-GCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 24107 | 0.67 | 0.319652 |
Target: 5'- uGGCccuUG-GCCGUGCUG-CGCGUGUCg -3' miRNA: 3'- uCUG---ACgCGGUACGACgGCGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 14891 | 0.68 | 0.261829 |
Target: 5'- cAGAaUGCGCCA-GCUGCUaCgGUGCCg -3' miRNA: 3'- -UCUgACGCGGUaCGACGGcG-CACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 34365 | 0.67 | 0.311928 |
Target: 5'- gAGACgaGCGCCccgcguaucagaGUGCgGCCGgGcgcgagGCCCg -3' miRNA: 3'- -UCUGa-CGCGG------------UACGaCGGCgCa-----CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 31191 | 0.67 | 0.304347 |
Target: 5'- cGGGCaUGCGCgCGUagauuucggGC-GCCGCGUGCUUc -3' miRNA: 3'- -UCUG-ACGCG-GUA---------CGaCGGCGCACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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