miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28036 3' -61.1 NC_005887.1 + 21287 1.1 0.000222
Target:  5'- gCCACCCCACACCGGCGCCGACGACGAa -3'
miRNA:   3'- -GGUGGGGUGUGGCCGCGGCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 25822 0.85 0.01757
Target:  5'- aCGCgCCCAC-UCGGCGCCGGCGGCGAc -3'
miRNA:   3'- gGUG-GGGUGuGGCCGCGGCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 2445 0.79 0.053061
Target:  5'- aCACCUCGCugcgcuaCGGCGCCGuCGACGAg -3'
miRNA:   3'- gGUGGGGUGug-----GCCGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 12698 0.79 0.053061
Target:  5'- gCUACCUCGCGCCGcGCGUgagugaCGACGGCGAg -3'
miRNA:   3'- -GGUGGGGUGUGGC-CGCG------GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 30454 0.78 0.059346
Target:  5'- -aGCCCCGCcgugaaguuGCCGGCGCUGccgaACGACGAa -3'
miRNA:   3'- ggUGGGGUG---------UGGCCGCGGC----UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 37724 0.77 0.064526
Target:  5'- aUCGCgCCGgcggcCACCGGCGCCG-CGGCGAg -3'
miRNA:   3'- -GGUGgGGU-----GUGGCCGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 35320 0.77 0.066348
Target:  5'- aUCGCUCCACuGCCGcGCGCCG-CGGCGGc -3'
miRNA:   3'- -GGUGGGGUG-UGGC-CGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 15145 0.76 0.078364
Target:  5'- aCCgACCCCAUGCaGGCGCuCGACGGCa- -3'
miRNA:   3'- -GG-UGGGGUGUGgCCGCG-GCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 37453 0.76 0.08056
Target:  5'- aCACCUCGCGCCGGCcCuCGGCGACc- -3'
miRNA:   3'- gGUGGGGUGUGGCCGcG-GCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 23448 0.75 0.089205
Target:  5'- gCCAUCCCGCcgcuuccaccggaaGcCCGGCaGCCGGCGACGc -3'
miRNA:   3'- -GGUGGGGUG--------------U-GGCCG-CGGCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 37686 0.75 0.095016
Target:  5'- gCCGCCCCGCAUgcaagCGaCGCCGGgGGCGAu -3'
miRNA:   3'- -GGUGGGGUGUG-----GCcGCGGCUgCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 321 0.75 0.097653
Target:  5'- uCCGCCUuguaCGCAUCGcGCGCCG-CGGCGAc -3'
miRNA:   3'- -GGUGGG----GUGUGGC-CGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 16140 0.75 0.100359
Target:  5'- aCCACCCCGCcaaccACCGGCgcGCCGAgUGcGCGAg -3'
miRNA:   3'- -GGUGGGGUG-----UGGCCG--CGGCU-GC-UGCU- -5'
28036 3' -61.1 NC_005887.1 + 38002 0.74 0.105984
Target:  5'- uCCACaUCCGCGCCGGCGUCGaucaguuccuGCGGCa- -3'
miRNA:   3'- -GGUG-GGGUGUGGCCGCGGC----------UGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 14010 0.74 0.118134
Target:  5'- gCCaAUgCCGCGCCGGCGCaGACGcCGAc -3'
miRNA:   3'- -GG-UGgGGUGUGGCCGCGgCUGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 3704 0.73 0.124684
Target:  5'- aCCACgCCGucgaGCCGcGCGCCGACcGCGAu -3'
miRNA:   3'- -GGUGgGGUg---UGGC-CGCGGCUGcUGCU- -5'
28036 3' -61.1 NC_005887.1 + 7639 0.73 0.135144
Target:  5'- aUCGCCgCGCACCGcaaGCG-CGACGACGGc -3'
miRNA:   3'- -GGUGGgGUGUGGC---CGCgGCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 26915 0.73 0.135144
Target:  5'- gCGCCCgAguCGCUGGcCGCCGuCGACGAa -3'
miRNA:   3'- gGUGGGgU--GUGGCC-GCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 27738 0.73 0.138806
Target:  5'- gCGCCCuCGa--CGGCGCCGACGGCc- -3'
miRNA:   3'- gGUGGG-GUgugGCCGCGGCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 30005 0.73 0.138806
Target:  5'- gUCACCgCCugGCCGGCGagCGACGuACGc -3'
miRNA:   3'- -GGUGG-GGugUGGCCGCg-GCUGC-UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.