miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28036 3' -61.1 NC_005887.1 + 27786 0.69 0.239399
Target:  5'- -aGCgCCAUGacgaCGGCGCCGACGcagGCGAg -3'
miRNA:   3'- ggUGgGGUGUg---GCCGCGGCUGC---UGCU- -5'
28036 3' -61.1 NC_005887.1 + 4620 0.72 0.167085
Target:  5'- cUCGCCgCgGCGCCGGUggccGCCGGCG-CGAu -3'
miRNA:   3'- -GGUGG-GgUGUGGCCG----CGGCUGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 29388 0.71 0.176067
Target:  5'- cUCGgCCCAUGCCGGCGCgGuCG-CGAu -3'
miRNA:   3'- -GGUgGGGUGUGGCCGCGgCuGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 25009 0.71 0.180718
Target:  5'- gUCAgCUCGCGCCGGCGgCCGcCGGCc- -3'
miRNA:   3'- -GGUgGGGUGUGGCCGC-GGCuGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 16522 0.71 0.185477
Target:  5'- aUCGCgUCGcCGCCGGCGCCGA-GugGGc -3'
miRNA:   3'- -GGUGgGGU-GUGGCCGCGGCUgCugCU- -5'
28036 3' -61.1 NC_005887.1 + 18900 0.71 0.200422
Target:  5'- gUCGCCCgGCACCGGCaGCCcGCaGCGc -3'
miRNA:   3'- -GGUGGGgUGUGGCCG-CGGcUGcUGCu -5'
28036 3' -61.1 NC_005887.1 + 40770 0.71 0.200422
Target:  5'- gCGCCgCGCGCCGccgaGCCGGCGGuCGAg -3'
miRNA:   3'- gGUGGgGUGUGGCcg--CGGCUGCU-GCU- -5'
28036 3' -61.1 NC_005887.1 + 29912 0.7 0.221969
Target:  5'- cCCACuCCCACauGCCGcgggccucGCGCCGAucucgggauCGACGGu -3'
miRNA:   3'- -GGUG-GGGUG--UGGC--------CGCGGCU---------GCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 18020 0.7 0.227656
Target:  5'- aCCGCCgCGCGCuuaCGcGCGCCGGacUGACGGc -3'
miRNA:   3'- -GGUGGgGUGUG---GC-CGCGGCU--GCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 6305 0.72 0.167085
Target:  5'- gUCugCCCACACCgacguGGCGCaagcuguaCGGCGGCGu -3'
miRNA:   3'- -GGugGGGUGUGG-----CCGCG--------GCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 40677 0.72 0.162749
Target:  5'- aCCAUCCUGCACCuGGCGCgCG-CGcACGGc -3'
miRNA:   3'- -GGUGGGGUGUGG-CCGCG-GCuGC-UGCU- -5'
28036 3' -61.1 NC_005887.1 + 4337 0.72 0.162749
Target:  5'- gCCGCaggaacugaUCgACGCCGGCGCgGAUGugGAu -3'
miRNA:   3'- -GGUG---------GGgUGUGGCCGCGgCUGCugCU- -5'
28036 3' -61.1 NC_005887.1 + 35320 0.77 0.066348
Target:  5'- aUCGCUCCACuGCCGcGCGCCG-CGGCGGc -3'
miRNA:   3'- -GGUGGGGUG-UGGC-CGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 15145 0.76 0.078364
Target:  5'- aCCgACCCCAUGCaGGCGCuCGACGGCa- -3'
miRNA:   3'- -GG-UGGGGUGUGgCCGCG-GCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 23448 0.75 0.089205
Target:  5'- gCCAUCCCGCcgcuuccaccggaaGcCCGGCaGCCGGCGACGc -3'
miRNA:   3'- -GGUGGGGUG--------------U-GGCCG-CGGCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 37686 0.75 0.095016
Target:  5'- gCCGCCCCGCAUgcaagCGaCGCCGGgGGCGAu -3'
miRNA:   3'- -GGUGGGGUGUG-----GCcGCGGCUgCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 16140 0.75 0.100359
Target:  5'- aCCACCCCGCcaaccACCGGCgcGCCGAgUGcGCGAg -3'
miRNA:   3'- -GGUGGGGUG-----UGGCCG--CGGCU-GC-UGCU- -5'
28036 3' -61.1 NC_005887.1 + 3704 0.73 0.124684
Target:  5'- aCCACgCCGucgaGCCGcGCGCCGACcGCGAu -3'
miRNA:   3'- -GGUGgGGUg---UGGC-CGCGGCUGcUGCU- -5'
28036 3' -61.1 NC_005887.1 + 26915 0.73 0.135144
Target:  5'- gCGCCCgAguCGCUGGcCGCCGuCGACGAa -3'
miRNA:   3'- gGUGGGgU--GUGGCC-GCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 40460 0.73 0.142559
Target:  5'- -gAUCCCGaauGCCGGCGUCGACGAgcuCGAu -3'
miRNA:   3'- ggUGGGGUg--UGGCCGCGGCUGCU---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.