miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28036 3' -61.1 NC_005887.1 + 321 0.75 0.097653
Target:  5'- uCCGCCUuguaCGCAUCGcGCGCCG-CGGCGAc -3'
miRNA:   3'- -GGUGGG----GUGUGGC-CGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 541 0.69 0.257957
Target:  5'- gCCGCCgCGCGCC-GCGCCGgauacaGCG-CGAa -3'
miRNA:   3'- -GGUGGgGUGUGGcCGCGGC------UGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 770 0.66 0.409185
Target:  5'- gCCGCCgCugGCCgacaggaacgucucGGCGCUGGCuGACu- -3'
miRNA:   3'- -GGUGGgGugUGG--------------CCGCGGCUG-CUGcu -5'
28036 3' -61.1 NC_005887.1 + 1219 0.67 0.35201
Target:  5'- aUCACCUuauCugGCgGGCGCUGcGCGGCGc -3'
miRNA:   3'- -GGUGGG---GugUGgCCGCGGC-UGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 1561 0.67 0.328308
Target:  5'- gUCGCCgCCACgaaccucgaccGCCGGC-UCGGCGGCGc -3'
miRNA:   3'- -GGUGG-GGUG-----------UGGCCGcGGCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 1616 0.66 0.385453
Target:  5'- aUCGCCUCgACGCgGGCGgCGACcuCGAa -3'
miRNA:   3'- -GGUGGGG-UGUGgCCGCgGCUGcuGCU- -5'
28036 3' -61.1 NC_005887.1 + 2445 0.79 0.053061
Target:  5'- aCACCUCGCugcgcuaCGGCGCCGuCGACGAg -3'
miRNA:   3'- gGUGGGGUGug-----GCCGCGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 2857 0.66 0.380305
Target:  5'- aCAUCCCaAUGCCGcaggcgguggauaacGCGCaGGCGACGAc -3'
miRNA:   3'- gGUGGGG-UGUGGC---------------CGCGgCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 2953 0.66 0.402945
Target:  5'- gCACCgCCGCgACCauccuCGCCGGCGACu- -3'
miRNA:   3'- gGUGG-GGUG-UGGcc---GCGGCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 3704 0.73 0.124684
Target:  5'- aCCACgCCGucgaGCCGcGCGCCGACcGCGAu -3'
miRNA:   3'- -GGUGgGGUg---UGGC-CGCGGCUGcUGCU- -5'
28036 3' -61.1 NC_005887.1 + 3893 0.67 0.328309
Target:  5'- aCgACgCCAUGCCGGauguGCgGAUGGCGAa -3'
miRNA:   3'- -GgUGgGGUGUGGCCg---CGgCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 4024 0.68 0.277674
Target:  5'- cCCACCaCCuuccugaGCCGGUGaucgacaaCGGCGACGGc -3'
miRNA:   3'- -GGUGG-GGug-----UGGCCGCg-------GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 4337 0.72 0.162749
Target:  5'- gCCGCaggaacugaUCgACGCCGGCGCgGAUGugGAu -3'
miRNA:   3'- -GGUG---------GGgUGUGGCCGCGgCUGCugCU- -5'
28036 3' -61.1 NC_005887.1 + 4620 0.72 0.167085
Target:  5'- cUCGCCgCgGCGCCGGUggccGCCGGCG-CGAu -3'
miRNA:   3'- -GGUGG-GgUGUGGCCG----CGGCUGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 4737 0.67 0.336076
Target:  5'- aCCGCCgCgagcaAUACCGGCGgUGcuuuuGCGACGAg -3'
miRNA:   3'- -GGUGGgG-----UGUGGCCGCgGC-----UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 4930 0.7 0.233465
Target:  5'- uCCACUCCGCACCuGGCGUgcaGGCagucGCGAc -3'
miRNA:   3'- -GGUGGGGUGUGG-CCGCGg--CUGc---UGCU- -5'
28036 3' -61.1 NC_005887.1 + 5021 0.71 0.200422
Target:  5'- aCCgAUgCCAgUGCCGGCGCUGcuGCGACGAc -3'
miRNA:   3'- -GG-UGgGGU-GUGGCCGCGGC--UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 6225 0.72 0.171523
Target:  5'- aUCACCgagCCACGCCGGacguucgaaGUCGACGAgGAa -3'
miRNA:   3'- -GGUGG---GGUGUGGCCg--------CGGCUGCUgCU- -5'
28036 3' -61.1 NC_005887.1 + 6305 0.72 0.167085
Target:  5'- gUCugCCCACACCgacguGGCGCaagcuguaCGGCGGCGu -3'
miRNA:   3'- -GGugGGGUGUGG-----CCGCG--------GCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 6316 0.72 0.146405
Target:  5'- cCUugCgCCuCGCCGGCGCCGAggUGACGc -3'
miRNA:   3'- -GGugG-GGuGUGGCCGCGGCU--GCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.