miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28039 5' -54.3 NC_005887.1 + 29792 0.66 0.682572
Target:  5'- ---gCGCAUgCCGGCGGCcGUcgacgCCACg -3'
miRNA:   3'- guuaGCGUG-GGCCGUCGuCAaa---GGUG- -5'
28039 5' -54.3 NC_005887.1 + 24482 0.66 0.671234
Target:  5'- cCGAUCGUgucgucgauGCCCGGCAGgaucuucgcCAGUUccUCgACg -3'
miRNA:   3'- -GUUAGCG---------UGGGCCGUC---------GUCAA--AGgUG- -5'
28039 5' -54.3 NC_005887.1 + 30695 0.66 0.659855
Target:  5'- --cUCGUACUCGGCgAGCAGgug-CGCg -3'
miRNA:   3'- guuAGCGUGGGCCG-UCGUCaaagGUG- -5'
28039 5' -54.3 NC_005887.1 + 42045 0.66 0.641595
Target:  5'- aCGcgCGCACCgCGGCcucgcugaucacgccAcGCAGUUcCCGCg -3'
miRNA:   3'- -GUuaGCGUGG-GCCG---------------U-CGUCAAaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 31385 0.66 0.637025
Target:  5'- ---aCGCGCUCGGCguAGCGGUgcgugCCGu -3'
miRNA:   3'- guuaGCGUGGGCCG--UCGUCAaa---GGUg -5'
28039 5' -54.3 NC_005887.1 + 1984 0.67 0.625598
Target:  5'- --cUCGCGCgcgaCGGCGGCAcGg--CCGCg -3'
miRNA:   3'- guuAGCGUGg---GCCGUCGU-CaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 30147 0.67 0.598217
Target:  5'- ---gCGCGCCCGGCGcggcgcuguccuucGCGGUcugcaugUUCUGCa -3'
miRNA:   3'- guuaGCGUGGGCCGU--------------CGUCA-------AAGGUG- -5'
28039 5' -54.3 NC_005887.1 + 17265 0.67 0.591395
Target:  5'- aGAUCGUGCCgGGCgagacgucgGGCGGcg-CCGCg -3'
miRNA:   3'- gUUAGCGUGGgCCG---------UCGUCaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 17799 0.67 0.580054
Target:  5'- gCGAUCauggGCGCCCGGCcgaAGguGcggCCGCg -3'
miRNA:   3'- -GUUAG----CGUGGGCCG---UCguCaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 31566 0.67 0.580054
Target:  5'- uGGUCGU-UCUGGUAGCAGa-UCCACg -3'
miRNA:   3'- gUUAGCGuGGGCCGUCGUCaaAGGUG- -5'
28039 5' -54.3 NC_005887.1 + 26231 0.67 0.56876
Target:  5'- uGGUUGCGCgCGGC-GCAGcg-CCACc -3'
miRNA:   3'- gUUAGCGUGgGCCGuCGUCaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 38919 0.68 0.557522
Target:  5'- cCGGUUGCACCCacgaaaugaggGGCAGC--UUUCCGa -3'
miRNA:   3'- -GUUAGCGUGGG-----------CCGUCGucAAAGGUg -5'
28039 5' -54.3 NC_005887.1 + 36744 0.68 0.557522
Target:  5'- uUAAUCGUGCcgaugCCGcGCGGCAGgUUCCAa -3'
miRNA:   3'- -GUUAGCGUG-----GGC-CGUCGUCaAAGGUg -5'
28039 5' -54.3 NC_005887.1 + 13608 0.68 0.530829
Target:  5'- -cAUCGCugCUGGCAGCGcGgcgcgcggcggCCGCa -3'
miRNA:   3'- guUAGCGugGGCCGUCGU-Caaa--------GGUG- -5'
28039 5' -54.3 NC_005887.1 + 37722 0.68 0.524226
Target:  5'- uGAUCGCG-CCGGCGGCcaccGGcg-CCGCg -3'
miRNA:   3'- gUUAGCGUgGGCCGUCG----UCaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 7284 0.68 0.522032
Target:  5'- aAGUCGCGCCCgccgacgacGGCAGCGaccucgcGUaaccccaUUCCACc -3'
miRNA:   3'- gUUAGCGUGGG---------CCGUCGU-------CA-------AAGGUG- -5'
28039 5' -54.3 NC_005887.1 + 35864 0.69 0.502454
Target:  5'- gGAUUGCGCUCGGCAGaCAccgcgacgCCGCg -3'
miRNA:   3'- gUUAGCGUGGGCCGUC-GUcaaa----GGUG- -5'
28039 5' -54.3 NC_005887.1 + 27908 0.69 0.491716
Target:  5'- gGAUCGCACCCGuuuucaagccacGCGGCGGUg--CAUu -3'
miRNA:   3'- gUUAGCGUGGGC------------CGUCGUCAaagGUG- -5'
28039 5' -54.3 NC_005887.1 + 37249 0.69 0.470568
Target:  5'- --cUCGaCACCCGGCGGCAcg--UCGCu -3'
miRNA:   3'- guuAGC-GUGGGCCGUCGUcaaaGGUG- -5'
28039 5' -54.3 NC_005887.1 + 8930 0.69 0.449893
Target:  5'- gGAUCGUcuGCUCGGUcGCGGUaUCUACg -3'
miRNA:   3'- gUUAGCG--UGGGCCGuCGUCAaAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.