miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28040 5' -53.6 NC_005887.1 + 5152 0.66 0.747172
Target:  5'- cCGACG-UCGGCGcGCCGCUGaugcUGAUGg -3'
miRNA:   3'- -GCUGCuAGUCGCcCGGUGGC----AUUAUa -5'
28040 5' -53.6 NC_005887.1 + 1493 0.66 0.747172
Target:  5'- gCGGCGcUCGcGCGGcGCgGCCGUGcgGa -3'
miRNA:   3'- -GCUGCuAGU-CGCC-CGgUGGCAUuaUa -5'
28040 5' -53.6 NC_005887.1 + 27138 0.66 0.736351
Target:  5'- uCGGCGAUCAucgccuGCaGGuuGCCGCCGUAc--- -3'
miRNA:   3'- -GCUGCUAGU------CG-CC--CGGUGGCAUuaua -5'
28040 5' -53.6 NC_005887.1 + 9037 0.66 0.735263
Target:  5'- uGACGuuuGUCGGCGGcccguucGCgGCCGUGAa-- -3'
miRNA:   3'- gCUGC---UAGUCGCC-------CGgUGGCAUUaua -5'
28040 5' -53.6 NC_005887.1 + 24944 0.66 0.725418
Target:  5'- gCGACGcgugCGcGCGGGCCGCCu------ -3'
miRNA:   3'- -GCUGCua--GU-CGCCCGGUGGcauuaua -5'
28040 5' -53.6 NC_005887.1 + 34938 0.66 0.725418
Target:  5'- aGGCGG-CGGCGGGUgcgACCGUGGc-- -3'
miRNA:   3'- gCUGCUaGUCGCCCGg--UGGCAUUaua -5'
28040 5' -53.6 NC_005887.1 + 41483 0.66 0.714386
Target:  5'- cCGGCGG-C-GCGGGCCACgCGUc---- -3'
miRNA:   3'- -GCUGCUaGuCGCCCGGUG-GCAuuaua -5'
28040 5' -53.6 NC_005887.1 + 22786 0.66 0.714386
Target:  5'- uCGACGc-CGGCGcGGCCGCUGUu---- -3'
miRNA:   3'- -GCUGCuaGUCGC-CCGGUGGCAuuaua -5'
28040 5' -53.6 NC_005887.1 + 13188 0.67 0.65817
Target:  5'- -aGCGGUCgAGCaGGCCGCCGg----- -3'
miRNA:   3'- gcUGCUAG-UCGcCCGGUGGCauuaua -5'
28040 5' -53.6 NC_005887.1 + 27705 0.68 0.612655
Target:  5'- gCGACGggCAGCaccgcgccGGCUGCCGUGAg-- -3'
miRNA:   3'- -GCUGCuaGUCGc-------CCGGUGGCAUUaua -5'
28040 5' -53.6 NC_005887.1 + 12660 0.68 0.612655
Target:  5'- aGugGGUCGGCGauuuGCCGCCGa----- -3'
miRNA:   3'- gCugCUAGUCGCc---CGGUGGCauuaua -5'
28040 5' -53.6 NC_005887.1 + 32310 0.68 0.609244
Target:  5'- gCGACauGAUgccgcuguucgugcCAGCGcGGCCGCgCGUGAUGUg -3'
miRNA:   3'- -GCUG--CUA--------------GUCGC-CCGGUG-GCAUUAUA- -5'
28040 5' -53.6 NC_005887.1 + 34688 0.69 0.534052
Target:  5'- uGuCGAgcagCAGCGGGCgGCCGUc---- -3'
miRNA:   3'- gCuGCUa---GUCGCCCGgUGGCAuuaua -5'
28040 5' -53.6 NC_005887.1 + 17796 0.7 0.484354
Target:  5'- aCGGCGAUCaugGGCGcccggccgaaggugcGGCCGCgCGUGAUGc -3'
miRNA:   3'- -GCUGCUAG---UCGC---------------CCGGUG-GCAUUAUa -5'
28040 5' -53.6 NC_005887.1 + 16401 0.7 0.480134
Target:  5'- uCGGCG-UCuGcCGGGCCACCGUc---- -3'
miRNA:   3'- -GCUGCuAGuC-GCCCGGUGGCAuuaua -5'
28040 5' -53.6 NC_005887.1 + 298 0.7 0.480134
Target:  5'- uGGCguGAUCAGCGaGGCCGCgGUGc--- -3'
miRNA:   3'- gCUG--CUAGUCGC-CCGGUGgCAUuaua -5'
28040 5' -53.6 NC_005887.1 + 32293 0.7 0.459313
Target:  5'- gGGCGAUCGuCGGGCCAgCCGg----- -3'
miRNA:   3'- gCUGCUAGUcGCCCGGU-GGCauuaua -5'
28040 5' -53.6 NC_005887.1 + 2341 0.7 0.459313
Target:  5'- uGGCGAUcCGGCGGGCgACCa------ -3'
miRNA:   3'- gCUGCUA-GUCGCCCGgUGGcauuaua -5'
28040 5' -53.6 NC_005887.1 + 1948 0.71 0.438983
Target:  5'- aCGGCGAUCGGUGGGUCGugaacCCGgcGg-- -3'
miRNA:   3'- -GCUGCUAGUCGCCCGGU-----GGCauUaua -5'
28040 5' -53.6 NC_005887.1 + 18137 0.72 0.354333
Target:  5'- cCGGCGAagcGCGGGCCGCCGa----- -3'
miRNA:   3'- -GCUGCUaguCGCCCGGUGGCauuaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.