miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28043 3' -56.1 NC_005887.1 + 9828 0.66 0.616807
Target:  5'- cGUGGCCGgauaugcCGUUCGAgcagauggagcUUUUGUGAGCGg -3'
miRNA:   3'- -CAUCGGCa------GCAGGCU-----------GAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 23951 0.66 0.616807
Target:  5'- cGgcGCCGcggCGUaggccaUCGGgUUCGCGAGCGc -3'
miRNA:   3'- -CauCGGCa--GCA------GGCUgAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 29498 0.66 0.616807
Target:  5'- cGUAGCCGgCGgccUCGACg--GCGGGCGc -3'
miRNA:   3'- -CAUCGGCaGCa--GGCUGaagCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 12913 0.66 0.616807
Target:  5'- -gAGCCagcaCG-CCGGUUUCGCGAGCGc -3'
miRNA:   3'- caUCGGca--GCaGGCUGAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 38094 0.66 0.616807
Target:  5'- --uGCuCGUCGcgcuugCCGuGCUccaUCGCGAGCAg -3'
miRNA:   3'- cauCG-GCAGCa-----GGC-UGA---AGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 20642 0.66 0.605688
Target:  5'- cGUGGCCGgacUGUCUG---UUGCGGGCAc -3'
miRNA:   3'- -CAUCGGCa--GCAGGCugaAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 3337 0.66 0.594592
Target:  5'- -aAGCCGcCGU-CGACUgCGCGguGGCAc -3'
miRNA:   3'- caUCGGCaGCAgGCUGAaGCGC--UCGU- -5'
28043 3' -56.1 NC_005887.1 + 28716 0.66 0.594592
Target:  5'- cGUAGUCGUCGaaCGACacgCGCGcGCu -3'
miRNA:   3'- -CAUCGGCAGCagGCUGaa-GCGCuCGu -5'
28043 3' -56.1 NC_005887.1 + 34287 0.66 0.583529
Target:  5'- --uGCCGUCG-CCGugcgGCUgacUGCGGGCGg -3'
miRNA:   3'- cauCGGCAGCaGGC----UGAa--GCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 28967 0.66 0.572507
Target:  5'- --cGCCG-CG-CCGGCcuucagCGCGAGCGc -3'
miRNA:   3'- cauCGGCaGCaGGCUGaa----GCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 37464 0.67 0.561535
Target:  5'- -cGGCCcUCGg-CGACcaucgUCGCGAGCGg -3'
miRNA:   3'- caUCGGcAGCagGCUGa----AGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 32522 0.67 0.561535
Target:  5'- uUGGCCG-CGcugaCCGGCUgcgacgcguUCGCGGGCc -3'
miRNA:   3'- cAUCGGCaGCa---GGCUGA---------AGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 41547 0.67 0.550621
Target:  5'- aUGGCUGUUGaUCgCGA--UCGCGAGCu -3'
miRNA:   3'- cAUCGGCAGC-AG-GCUgaAGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 24421 0.67 0.539773
Target:  5'- -gAGCuCGuUCGUgCGcACgcaggUCGCGAGCAg -3'
miRNA:   3'- caUCG-GC-AGCAgGC-UGa----AGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 36965 0.67 0.528998
Target:  5'- ---uCCGUCGUCuCGGCgucgCGCGGGUc -3'
miRNA:   3'- caucGGCAGCAG-GCUGaa--GCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 34705 0.67 0.528998
Target:  5'- -cGGCCGUCGUCgCGcuuGCggugCGCG-GCGa -3'
miRNA:   3'- caUCGGCAGCAG-GC---UGaa--GCGCuCGU- -5'
28043 3' -56.1 NC_005887.1 + 27011 0.67 0.518304
Target:  5'- cGUGGCCGagUCGaUCCcGCgugUCGCGAGg- -3'
miRNA:   3'- -CAUCGGC--AGC-AGGcUGa--AGCGCUCgu -5'
28043 3' -56.1 NC_005887.1 + 17337 0.67 0.507697
Target:  5'- cUGGCCGgCGgCCGcCggCGCGAGCu -3'
miRNA:   3'- cAUCGGCaGCaGGCuGaaGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 17793 0.68 0.486767
Target:  5'- cGUGGCUGUCGUCgcaggGGCUgaUCGcCGAGUc -3'
miRNA:   3'- -CAUCGGCAGCAGg----CUGA--AGC-GCUCGu -5'
28043 3' -56.1 NC_005887.1 + 13906 0.68 0.476456
Target:  5'- -aAGCCGaCGaagggUCaGCUUCGCGAGCAc -3'
miRNA:   3'- caUCGGCaGCa----GGcUGAAGCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.