miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 2192 0.7 0.562793
Target:  5'- cGCGCAgcUCAcacGCGGCgaGcGCGGCGCGc -3'
miRNA:   3'- uCGCGU--AGUu--UGCCGaaC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 39893 0.7 0.574224
Target:  5'- cAGCGCcUCGucGACGGCgccGUAGCGCGc -3'
miRNA:   3'- -UCGCGuAGU--UUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26077 0.7 0.574224
Target:  5'- cAGCGCGUC-AGCGGCccgcgcGGCGuuuCAUGg -3'
miRNA:   3'- -UCGCGUAGuUUGCCGaa----CCGUu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 9582 0.7 0.574224
Target:  5'- uGCGCA-CGAGcCGGCUgcaUGGC-GCGCGc -3'
miRNA:   3'- uCGCGUaGUUU-GCCGA---ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 6303 0.7 0.582258
Target:  5'- gAGCGCGUCGAGgccuugcgccucgcCGGCgccgaGGUGACGCu -3'
miRNA:   3'- -UCGCGUAGUUU--------------GCCGaa---CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 17014 0.7 0.585708
Target:  5'- cGCGCAgagCAAGguGCUUGGCAACGg- -3'
miRNA:   3'- uCGCGUa--GUUUgcCGAACCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 11100 0.7 0.59262
Target:  5'- uGGCGCAUCGgcuggugcgcgcgaAGCuggccgaGGCgccgUGGCGGCGCa -3'
miRNA:   3'- -UCGCGUAGU--------------UUG-------CCGa---ACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27262 0.7 0.596082
Target:  5'- cGgGCAUCAucugcgacacgccGGCGGCUcccuucGGCGACACc -3'
miRNA:   3'- uCgCGUAGU-------------UUGCCGAa-----CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 19724 0.7 0.597236
Target:  5'- gGGUGUcgCGGAucUGGUgcaUUGGCGGCACGa -3'
miRNA:   3'- -UCGCGuaGUUU--GCCG---AACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15621 0.7 0.597236
Target:  5'- cGCGCAgCAGGCGGCcgGGCu-CGCc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaaCCGuuGUGc -5'
28045 5' -51.8 NC_005887.1 + 2544 0.7 0.601856
Target:  5'- aGGCGCuGUCGGGCGGCUacugcuuccgccgcaUGGCcgugaGCGg -3'
miRNA:   3'- -UCGCG-UAGUUUGCCGA---------------ACCGuug--UGC- -5'
28045 5' -51.8 NC_005887.1 + 1178 0.7 0.601857
Target:  5'- aGGCGgAUCAuguucgacaccauuGCGGCUuucUGGC-ACGCGg -3'
miRNA:   3'- -UCGCgUAGUu-------------UGCCGA---ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 36024 0.69 0.608796
Target:  5'- cAGCaGCGUCAccuCGGCgccGGCGAgGCGc -3'
miRNA:   3'- -UCG-CGUAGUuu-GCCGaa-CCGUUgUGC- -5'
28045 5' -51.8 NC_005887.1 + 10156 0.69 0.608796
Target:  5'- gAGCGaCGUCu-ACGGCU-GGCAucggcauccggACGCGa -3'
miRNA:   3'- -UCGC-GUAGuuUGCCGAaCCGU-----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40534 0.69 0.631973
Target:  5'- cGCGCGgcagCGacGACGGUcUGGCGcucgcGCACGa -3'
miRNA:   3'- uCGCGUa---GU--UUGCCGaACCGU-----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 979 0.69 0.643568
Target:  5'- cGCGCAcggucugcUCGAAC-GCUUcccGGCGGCGCGc -3'
miRNA:   3'- uCGCGU--------AGUUUGcCGAA---CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27232 0.69 0.65515
Target:  5'- gGGCGCAUC--GCGGCgcaacuGCAucGCGCGc -3'
miRNA:   3'- -UCGCGUAGuuUGCCGaac---CGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18539 0.69 0.65515
Target:  5'- gGGCGUucUCGGugGGC--GGCGGCGCc -3'
miRNA:   3'- -UCGCGu-AGUUugCCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 11010 0.69 0.65515
Target:  5'- gGGC-CAUCGacGACGGCccGGuCGGCACGu -3'
miRNA:   3'- -UCGcGUAGU--UUGCCGaaCC-GUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41352 0.69 0.65515
Target:  5'- cAGCGCG-CGcACGGCggccGGCAauuuGCGCGu -3'
miRNA:   3'- -UCGCGUaGUuUGCCGaa--CCGU----UGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.