miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 25652 0.68 0.394692
Target:  5'- uGAGCuucACCGCCA-GCCGCAgcgcguCGCCa- -3'
miRNA:   3'- -CUCG---UGGUGGUaCGGUGUau----GCGGga -5'
28048 5' -56.7 NC_005887.1 + 25284 0.67 0.473545
Target:  5'- cGAGCAgCGgCAUGaCgGCGUcCGCCCa -3'
miRNA:   3'- -CUCGUgGUgGUAC-GgUGUAuGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25152 0.67 0.453065
Target:  5'- -uGCGCgGCgCAacauUGCCGCGUGCGgCCg -3'
miRNA:   3'- cuCGUGgUG-GU----ACGGUGUAUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 24601 0.69 0.34141
Target:  5'- cGGGCGCCAUCA-GCCGC--GCGgCCg -3'
miRNA:   3'- -CUCGUGGUGGUaCGGUGuaUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 24532 0.67 0.463246
Target:  5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3'
miRNA:   3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 23810 0.68 0.385446
Target:  5'- cGGCGCCGCCGc-CCACcgagaACGCCCg -3'
miRNA:   3'- cUCGUGGUGGUacGGUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 23374 0.67 0.463246
Target:  5'- -uGCGCCAUgcUGCCGCGU--GCCCUu -3'
miRNA:   3'- cuCGUGGUGguACGGUGUAugCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 23159 0.66 0.515828
Target:  5'- -cGCGCCGCC-UGUCucc-ACGCCCg -3'
miRNA:   3'- cuCGUGGUGGuACGGuguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 21266 0.69 0.34141
Target:  5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3'
miRNA:   3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5'
28048 5' -56.7 NC_005887.1 + 19259 0.66 0.515828
Target:  5'- -uGUACCGCUugGUGCCGCcgACGCa-- -3'
miRNA:   3'- cuCGUGGUGG--UACGGUGuaUGCGgga -5'
28048 5' -56.7 NC_005887.1 + 19076 0.66 0.526641
Target:  5'- cGGGCugCGgCAaccGCCACGagcUGCGCCUUu -3'
miRNA:   3'- -CUCGugGUgGUa--CGGUGU---AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 17746 0.68 0.385446
Target:  5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3'
miRNA:   3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 16302 1.07 0.000627
Target:  5'- gGAGCACCACCAUGCCACAUACGCCCUu -3'
miRNA:   3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 15279 0.69 0.33305
Target:  5'- cGAGCGuCCGCCGgcgaacgagacUGCCGCAUAC-CUCg -3'
miRNA:   3'- -CUCGU-GGUGGU-----------ACGGUGUAUGcGGGa -5'
28048 5' -56.7 NC_005887.1 + 15082 0.73 0.20803
Target:  5'- gGAGcCGCCGgCGUGUCGCAgaugAUGCCCg -3'
miRNA:   3'- -CUC-GUGGUgGUACGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 14947 0.68 0.412651
Target:  5'- -cGCGCUGCCGUacgacgcGCCGCAcucgACGCCUa -3'
miRNA:   3'- cuCGUGGUGGUA-------CGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 14820 0.7 0.316785
Target:  5'- gGAGCGCCGcCCAUgaccgcccGCCGCGUauucACGCCa- -3'
miRNA:   3'- -CUCGUGGU-GGUA--------CGGUGUA----UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 14021 0.66 0.515828
Target:  5'- -cGCaACCGCCGgcgcGCCGCcgGCGCagCCUg -3'
miRNA:   3'- cuCG-UGGUGGUa---CGGUGuaUGCG--GGA- -5'
28048 5' -56.7 NC_005887.1 + 13935 0.68 0.394692
Target:  5'- cGAGCGCCugCGcgcgcucggcUGCgACGUGCGCgUg -3'
miRNA:   3'- -CUCGUGGugGU----------ACGgUGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 12933 0.66 0.526641
Target:  5'- cGAGCGCguCCcUGCCGCAgcaaGCCg- -3'
miRNA:   3'- -CUCGUGguGGuACGGUGUaug-CGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.