miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 21266 0.69 0.34141
Target:  5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3'
miRNA:   3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5'
28048 5' -56.7 NC_005887.1 + 23159 0.66 0.515828
Target:  5'- -cGCGCCGCC-UGUCucc-ACGCCCg -3'
miRNA:   3'- cuCGUGGUGGuACGGuguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 23374 0.67 0.463246
Target:  5'- -uGCGCCAUgcUGCCGCGU--GCCCUu -3'
miRNA:   3'- cuCGUGGUGguACGGUGUAugCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 23810 0.68 0.385446
Target:  5'- cGGCGCCGCCGc-CCACcgagaACGCCCg -3'
miRNA:   3'- cUCGUGGUGGUacGGUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 24532 0.67 0.463246
Target:  5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3'
miRNA:   3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 24601 0.69 0.34141
Target:  5'- cGGGCGCCAUCA-GCCGC--GCGgCCg -3'
miRNA:   3'- -CUCGUGGUGGUaCGGUGuaUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 25152 0.67 0.453065
Target:  5'- -uGCGCgGCgCAacauUGCCGCGUGCGgCCg -3'
miRNA:   3'- cuCGUGgUG-GU----ACGGUGUAUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 25284 0.67 0.473545
Target:  5'- cGAGCAgCGgCAUGaCgGCGUcCGCCCa -3'
miRNA:   3'- -CUCGUgGUgGUAC-GgUGUAuGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25652 0.68 0.394692
Target:  5'- uGAGCuucACCGCCA-GCCGCAgcgcguCGCCa- -3'
miRNA:   3'- -CUCG---UGGUGGUaCGGUGUau----GCGGga -5'
28048 5' -56.7 NC_005887.1 + 26471 0.67 0.463246
Target:  5'- cGAGCG-CACCGaGCUGCugGUGCGCCUg -3'
miRNA:   3'- -CUCGUgGUGGUaCGGUG--UAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 26699 0.68 0.385446
Target:  5'- cGGCGCgCAUC-UGCgACAcgGCGCCCUg -3'
miRNA:   3'- cUCGUG-GUGGuACGgUGUa-UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 26732 0.73 0.181334
Target:  5'- cGAGCccgGCCGCC-UGCUGCGcgACGCCCg -3'
miRNA:   3'- -CUCG---UGGUGGuACGGUGUa-UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 27189 0.7 0.316785
Target:  5'- aGGUACUucGCCAUGCCGuCGaGCGCCUg -3'
miRNA:   3'- cUCGUGG--UGGUACGGU-GUaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 27713 0.68 0.385446
Target:  5'- cAGCACCGCgCcgGCUGCcgugagcGCGCCCUc -3'
miRNA:   3'- cUCGUGGUG-GuaCGGUGua-----UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 28143 0.69 0.367387
Target:  5'- cGGCGCCGCCcUGuCCGaggccGCGCCCg -3'
miRNA:   3'- cUCGUGGUGGuAC-GGUgua--UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 28929 0.67 0.450034
Target:  5'- -uGCGCCGCuCGucgcagcagcggcuUGCCGCcgACGUCCg -3'
miRNA:   3'- cuCGUGGUG-GU--------------ACGGUGuaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 30923 0.66 0.494481
Target:  5'- cGGCAUCGCCuuGUGCCAgc-GCGCUCg -3'
miRNA:   3'- cUCGUGGUGG--UACGGUguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 31131 0.7 0.30888
Target:  5'- cGAGCuuGCCgggcagGCCGUG-CGCAUACGCCUg -3'
miRNA:   3'- -CUCG--UGG------UGGUACgGUGUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 31176 0.67 0.433076
Target:  5'- -cGCGCCACuUGUGCUcggGCAUGCGCgCg -3'
miRNA:   3'- cuCGUGGUG-GUACGG---UGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 33792 0.67 0.463246
Target:  5'- cGGUGCUGCCuu-CgGCAUGCGCCCUc -3'
miRNA:   3'- cUCGUGGUGGuacGgUGUAUGCGGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.