miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 513 0.7 0.286072
Target:  5'- aGGCGCCGCCAgaUCGCGUGgucguCGCCCUu -3'
miRNA:   3'- cUCGUGGUGGUacGGUGUAU-----GCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 1812 0.67 0.47251
Target:  5'- cGAGCGCCagACCGucgucgcUGCCGC--GCGCCg- -3'
miRNA:   3'- -CUCGUGG--UGGU-------ACGGUGuaUGCGGga -5'
28048 5' -56.7 NC_005887.1 + 2338 0.68 0.394692
Target:  5'- -cGCGCCAUgAUGCgCACcgcgACGUCCUg -3'
miRNA:   3'- cuCGUGGUGgUACG-GUGua--UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 4170 0.68 0.41361
Target:  5'- uGAGC-CgGCCAUGCUGCAcacCGCCUa -3'
miRNA:   3'- -CUCGuGgUGGUACGGUGUau-GCGGGa -5'
28048 5' -56.7 NC_005887.1 + 8483 0.73 0.202432
Target:  5'- gGAGCGCUGUCGgcUGCCGCAggcucgUACGCCCUg -3'
miRNA:   3'- -CUCGUGGUGGU--ACGGUGU------AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 8657 0.67 0.453065
Target:  5'- -cGCGCCAcgaaaaaccaauCCGgaGCCugAUAUGCCCg -3'
miRNA:   3'- cuCGUGGU------------GGUa-CGGugUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 9923 0.68 0.385446
Target:  5'- uGAuCGCCGCCG-GCCACAU-CGCCg- -3'
miRNA:   3'- -CUcGUGGUGGUaCGGUGUAuGCGGga -5'
28048 5' -56.7 NC_005887.1 + 11220 0.66 0.537538
Target:  5'- -cGCACgGCC-UGCCcgGCAagcuCGCCCUg -3'
miRNA:   3'- cuCGUGgUGGuACGG--UGUau--GCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 12685 0.67 0.473545
Target:  5'- aAGCGCCAgCUGUGCUACcucGCGCCg- -3'
miRNA:   3'- cUCGUGGU-GGUACGGUGua-UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 12933 0.66 0.526641
Target:  5'- cGAGCGCguCCcUGCCGCAgcaaGCCg- -3'
miRNA:   3'- -CUCGUGguGGuACGGUGUaug-CGGga -5'
28048 5' -56.7 NC_005887.1 + 13935 0.68 0.394692
Target:  5'- cGAGCGCCugCGcgcgcucggcUGCgACGUGCGCgUg -3'
miRNA:   3'- -CUCGUGGugGU----------ACGgUGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 14021 0.66 0.515828
Target:  5'- -cGCaACCGCCGgcgcGCCGCcgGCGCagCCUg -3'
miRNA:   3'- cuCG-UGGUGGUa---CGGUGuaUGCG--GGA- -5'
28048 5' -56.7 NC_005887.1 + 14820 0.7 0.316785
Target:  5'- gGAGCGCCGcCCAUgaccgcccGCCGCGUauucACGCCa- -3'
miRNA:   3'- -CUCGUGGU-GGUA--------CGGUGUA----UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 14947 0.68 0.412651
Target:  5'- -cGCGCUGCCGUacgacgcGCCGCAcucgACGCCUa -3'
miRNA:   3'- cuCGUGGUGGUA-------CGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 15082 0.73 0.20803
Target:  5'- gGAGcCGCCGgCGUGUCGCAgaugAUGCCCg -3'
miRNA:   3'- -CUC-GUGGUgGUACGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 15279 0.69 0.33305
Target:  5'- cGAGCGuCCGCCGgcgaacgagacUGCCGCAUAC-CUCg -3'
miRNA:   3'- -CUCGU-GGUGGU-----------ACGGUGUAUGcGGGa -5'
28048 5' -56.7 NC_005887.1 + 16302 1.07 0.000627
Target:  5'- gGAGCACCACCAUGCCACAUACGCCCUu -3'
miRNA:   3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 17746 0.68 0.385446
Target:  5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3'
miRNA:   3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 19076 0.66 0.526641
Target:  5'- cGGGCugCGgCAaccGCCACGagcUGCGCCUUu -3'
miRNA:   3'- -CUCGugGUgGUa--CGGUGU---AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 19259 0.66 0.515828
Target:  5'- -uGUACCGCUugGUGCCGCcgACGCa-- -3'
miRNA:   3'- cuCGUGGUGG--UACGGUGuaUGCGgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.