miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 40360 0.75 0.136914
Target:  5'- cGAGCGCgGCCGUGCCGCucgucGCGCgCg -3'
miRNA:   3'- -CUCGUGgUGGUACGGUGua---UGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 12933 0.66 0.526641
Target:  5'- cGAGCGCguCCcUGCCGCAgcaaGCCg- -3'
miRNA:   3'- -CUCGUGguGGuACGGUGUaug-CGGga -5'
28048 5' -56.7 NC_005887.1 + 19259 0.66 0.515828
Target:  5'- -uGUACCGCUugGUGCCGCcgACGCa-- -3'
miRNA:   3'- cuCGUGGUGG--UACGGUGuaUGCGgga -5'
28048 5' -56.7 NC_005887.1 + 14021 0.66 0.515828
Target:  5'- -cGCaACCGCCGgcgcGCCGCcgGCGCagCCUg -3'
miRNA:   3'- cuCG-UGGUGGUa---CGGUGuaUGCG--GGA- -5'
28048 5' -56.7 NC_005887.1 + 30923 0.66 0.494481
Target:  5'- cGGCAUCGCCuuGUGCCAgc-GCGCUCg -3'
miRNA:   3'- cUCGUGGUGG--UACGGUguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 36238 0.67 0.483959
Target:  5'- aGGCACCACUucGCCAgcuCGUGCGCggCCg -3'
miRNA:   3'- cUCGUGGUGGuaCGGU---GUAUGCG--GGa -5'
28048 5' -56.7 NC_005887.1 + 24532 0.67 0.463246
Target:  5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3'
miRNA:   3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 31176 0.67 0.433076
Target:  5'- -cGCGCCACuUGUGCUcggGCAUGCGCgCg -3'
miRNA:   3'- cuCGUGGUG-GUACGG---UGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 14947 0.68 0.412651
Target:  5'- -cGCGCUGCCGUacgacgcGCCGCAcucgACGCCUa -3'
miRNA:   3'- cuCGUGGUGGUA-------CGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25652 0.68 0.394692
Target:  5'- uGAGCuucACCGCCA-GCCGCAgcgcguCGCCa- -3'
miRNA:   3'- -CUCG---UGGUGGUaCGGUGUau----GCGGga -5'
28048 5' -56.7 NC_005887.1 + 15082 0.73 0.20803
Target:  5'- gGAGcCGCCGgCGUGUCGCAgaugAUGCCCg -3'
miRNA:   3'- -CUC-GUGGUgGUACGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 31131 0.7 0.30888
Target:  5'- cGAGCuuGCCgggcagGCCGUG-CGCAUACGCCUg -3'
miRNA:   3'- -CUCG--UGG------UGGUACgGUGUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 15279 0.69 0.33305
Target:  5'- cGAGCGuCCGCCGgcgaacgagacUGCCGCAUAC-CUCg -3'
miRNA:   3'- -CUCGU-GGUGGU-----------ACGGUGUAUGcGGGa -5'
28048 5' -56.7 NC_005887.1 + 35368 0.69 0.336376
Target:  5'- cGGCACCACgCggGCCuGCAgcagcucaugcucgaUGCGCCCg -3'
miRNA:   3'- cUCGUGGUG-GuaCGG-UGU---------------AUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 21266 0.69 0.34141
Target:  5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3'
miRNA:   3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5'
28048 5' -56.7 NC_005887.1 + 34520 0.69 0.367387
Target:  5'- -cGC-CCAUCAgGCCGCAgcggAUGCCCg -3'
miRNA:   3'- cuCGuGGUGGUaCGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 17746 0.68 0.385446
Target:  5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3'
miRNA:   3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 16302 1.07 0.000627
Target:  5'- gGAGCACCACCAUGCCACAUACGCCCUu -3'
miRNA:   3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 19076 0.66 0.526641
Target:  5'- cGGGCugCGgCAaccGCCACGagcUGCGCCUUu -3'
miRNA:   3'- -CUCGugGUgGUa--CGGUGU---AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 23159 0.66 0.515828
Target:  5'- -cGCGCCGCC-UGUCucc-ACGCCCg -3'
miRNA:   3'- cuCGUGGUGGuACGGuguaUGCGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.