miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 16302 1.07 0.000627
Target:  5'- gGAGCACCACCAUGCCACAUACGCCCUu -3'
miRNA:   3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 40360 0.75 0.136914
Target:  5'- cGAGCGCgGCCGUGCCGCucgucGCGCgCg -3'
miRNA:   3'- -CUCGUGgUGGUACGGUGua---UGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 26732 0.73 0.181334
Target:  5'- cGAGCccgGCCGCC-UGCUGCGcgACGCCCg -3'
miRNA:   3'- -CUCG---UGGUGGuACGGUGUa-UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 8483 0.73 0.202432
Target:  5'- gGAGCGCUGUCGgcUGCCGCAggcucgUACGCCCUg -3'
miRNA:   3'- -CUCGUGGUGGU--ACGGUGU------AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 15082 0.73 0.20803
Target:  5'- gGAGcCGCCGgCGUGUCGCAgaugAUGCCCg -3'
miRNA:   3'- -CUC-GUGGUgGUACGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 513 0.7 0.286072
Target:  5'- aGGCGCCGCCAgaUCGCGUGgucguCGCCCUu -3'
miRNA:   3'- cUCGUGGUGGUacGGUGUAU-----GCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 31131 0.7 0.30888
Target:  5'- cGAGCuuGCCgggcagGCCGUG-CGCAUACGCCUg -3'
miRNA:   3'- -CUCG--UGG------UGGUACgGUGUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 27189 0.7 0.316785
Target:  5'- aGGUACUucGCCAUGCCGuCGaGCGCCUg -3'
miRNA:   3'- cUCGUGG--UGGUACGGU-GUaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 14820 0.7 0.316785
Target:  5'- gGAGCGCCGcCCAUgaccgcccGCCGCGUauucACGCCa- -3'
miRNA:   3'- -CUCGUGGU-GGUA--------CGGUGUA----UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 15279 0.69 0.33305
Target:  5'- cGAGCGuCCGCCGgcgaacgagacUGCCGCAUAC-CUCg -3'
miRNA:   3'- -CUCGU-GGUGGU-----------ACGGUGUAUGcGGGa -5'
28048 5' -56.7 NC_005887.1 + 35368 0.69 0.336376
Target:  5'- cGGCACCACgCggGCCuGCAgcagcucaugcucgaUGCGCCCg -3'
miRNA:   3'- cUCGUGGUG-GuaCGG-UGU---------------AUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 21266 0.69 0.34141
Target:  5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3'
miRNA:   3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5'
28048 5' -56.7 NC_005887.1 + 24601 0.69 0.34141
Target:  5'- cGGGCGCCAUCA-GCCGC--GCGgCCg -3'
miRNA:   3'- -CUCGUGGUGGUaCGGUGuaUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 38487 0.69 0.349061
Target:  5'- cGGGCuGCCGCCguacacaucgucgGUGCCgACGUagaaGCGCCCg -3'
miRNA:   3'- -CUCG-UGGUGG-------------UACGG-UGUA----UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 39647 0.69 0.349919
Target:  5'- -cGCGCgGCUcgGCCGCuUGcCGCCCg -3'
miRNA:   3'- cuCGUGgUGGuaCGGUGuAU-GCGGGa -5'
28048 5' -56.7 NC_005887.1 + 28143 0.69 0.367387
Target:  5'- cGGCGCCGCCcUGuCCGaggccGCGCCCg -3'
miRNA:   3'- cUCGUGGUGGuAC-GGUgua--UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 34520 0.69 0.367387
Target:  5'- -cGC-CCAUCAgGCCGCAgcggAUGCCCg -3'
miRNA:   3'- cuCGuGGUGGUaCGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 26699 0.68 0.385446
Target:  5'- cGGCGCgCAUC-UGCgACAcgGCGCCCUg -3'
miRNA:   3'- cUCGUG-GUGGuACGgUGUa-UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 9923 0.68 0.385446
Target:  5'- uGAuCGCCGCCG-GCCACAU-CGCCg- -3'
miRNA:   3'- -CUcGUGGUGGUaCGGUGUAuGCGGga -5'
28048 5' -56.7 NC_005887.1 + 17746 0.68 0.385446
Target:  5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3'
miRNA:   3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.