miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 26699 0.68 0.385446
Target:  5'- cGGCGCgCAUC-UGCgACAcgGCGCCCUg -3'
miRNA:   3'- cUCGUG-GUGGuACGgUGUa-UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 23810 0.68 0.385446
Target:  5'- cGGCGCCGCCGc-CCACcgagaACGCCCg -3'
miRNA:   3'- cUCGUGGUGGUacGGUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 17746 0.68 0.385446
Target:  5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3'
miRNA:   3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25652 0.68 0.394692
Target:  5'- uGAGCuucACCGCCA-GCCGCAgcgcguCGCCa- -3'
miRNA:   3'- -CUCG---UGGUGGUaCGGUGUau----GCGGga -5'
28048 5' -56.7 NC_005887.1 + 2338 0.68 0.394692
Target:  5'- -cGCGCCAUgAUGCgCACcgcgACGUCCUg -3'
miRNA:   3'- cuCGUGGUGgUACG-GUGua--UGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 13935 0.68 0.394692
Target:  5'- cGAGCGCCugCGcgcgcucggcUGCgACGUGCGCgUg -3'
miRNA:   3'- -CUCGUGGugGU----------ACGgUGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 14947 0.68 0.412651
Target:  5'- -cGCGCUGCCGUacgacgcGCCGCAcucgACGCCUa -3'
miRNA:   3'- cuCGUGGUGGUA-------CGGUGUa---UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 4170 0.68 0.41361
Target:  5'- uGAGC-CgGCCAUGCUGCAcacCGCCUa -3'
miRNA:   3'- -CUCGuGgUGGUACGGUGUau-GCGGGa -5'
28048 5' -56.7 NC_005887.1 + 31176 0.67 0.433076
Target:  5'- -cGCGCCACuUGUGCUcggGCAUGCGCgCg -3'
miRNA:   3'- cuCGUGGUG-GUACGG---UGUAUGCGgGa -5'
28048 5' -56.7 NC_005887.1 + 28929 0.67 0.450034
Target:  5'- -uGCGCCGCuCGucgcagcagcggcuUGCCGCcgACGUCCg -3'
miRNA:   3'- cuCGUGGUG-GU--------------ACGGUGuaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 34763 0.67 0.453065
Target:  5'- cGGCGCCGCUuacgcgAUGCCGuCcggAUACGCCUg -3'
miRNA:   3'- cUCGUGGUGG------UACGGU-G---UAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 8657 0.67 0.453065
Target:  5'- -cGCGCCAcgaaaaaccaauCCGgaGCCugAUAUGCCCg -3'
miRNA:   3'- cuCGUGGU------------GGUa-CGGugUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25152 0.67 0.453065
Target:  5'- -uGCGCgGCgCAacauUGCCGCGUGCGgCCg -3'
miRNA:   3'- cuCGUGgUG-GU----ACGGUGUAUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 24532 0.67 0.463246
Target:  5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3'
miRNA:   3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 26471 0.67 0.463246
Target:  5'- cGAGCG-CACCGaGCUGCugGUGCGCCUg -3'
miRNA:   3'- -CUCGUgGUGGUaCGGUG--UAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 33792 0.67 0.463246
Target:  5'- cGGUGCUGCCuu-CgGCAUGCGCCCUc -3'
miRNA:   3'- cUCGUGGUGGuacGgUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 23374 0.67 0.463246
Target:  5'- -uGCGCCAUgcUGCCGCGU--GCCCUu -3'
miRNA:   3'- cuCGUGGUGguACGGUGUAugCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 1812 0.67 0.47251
Target:  5'- cGAGCGCCagACCGucgucgcUGCCGC--GCGCCg- -3'
miRNA:   3'- -CUCGUGG--UGGU-------ACGGUGuaUGCGGga -5'
28048 5' -56.7 NC_005887.1 + 12685 0.67 0.473545
Target:  5'- aAGCGCCAgCUGUGCUACcucGCGCCg- -3'
miRNA:   3'- cUCGUGGU-GGUACGGUGua-UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 25284 0.67 0.473545
Target:  5'- cGAGCAgCGgCAUGaCgGCGUcCGCCCa -3'
miRNA:   3'- -CUCGUgGUgGUAC-GgUGUAuGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.