Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28048 | 5' | -56.7 | NC_005887.1 | + | 31176 | 0.67 | 0.433076 |
Target: 5'- -cGCGCCACuUGUGCUcggGCAUGCGCgCg -3' miRNA: 3'- cuCGUGGUG-GUACGG---UGUAUGCGgGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 4170 | 0.68 | 0.41361 |
Target: 5'- uGAGC-CgGCCAUGCUGCAcacCGCCUa -3' miRNA: 3'- -CUCGuGgUGGUACGGUGUau-GCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 14947 | 0.68 | 0.412651 |
Target: 5'- -cGCGCUGCCGUacgacgcGCCGCAcucgACGCCUa -3' miRNA: 3'- cuCGUGGUGGUA-------CGGUGUa---UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 25652 | 0.68 | 0.394692 |
Target: 5'- uGAGCuucACCGCCA-GCCGCAgcgcguCGCCa- -3' miRNA: 3'- -CUCG---UGGUGGUaCGGUGUau----GCGGga -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 13935 | 0.68 | 0.394692 |
Target: 5'- cGAGCGCCugCGcgcgcucggcUGCgACGUGCGCgUg -3' miRNA: 3'- -CUCGUGGugGU----------ACGgUGUAUGCGgGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 2338 | 0.68 | 0.394692 |
Target: 5'- -cGCGCCAUgAUGCgCACcgcgACGUCCUg -3' miRNA: 3'- cuCGUGGUGgUACG-GUGua--UGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 27713 | 0.68 | 0.385446 |
Target: 5'- cAGCACCGCgCcgGCUGCcgugagcGCGCCCUc -3' miRNA: 3'- cUCGUGGUG-GuaCGGUGua-----UGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 37726 | 0.68 | 0.385446 |
Target: 5'- -cGCGCCGgCG-GCCACcgGCGCCg- -3' miRNA: 3'- cuCGUGGUgGUaCGGUGuaUGCGGga -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 26699 | 0.68 | 0.385446 |
Target: 5'- cGGCGCgCAUC-UGCgACAcgGCGCCCUg -3' miRNA: 3'- cUCGUG-GUGGuACGgUGUa-UGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 23810 | 0.68 | 0.385446 |
Target: 5'- cGGCGCCGCCGc-CCACcgagaACGCCCg -3' miRNA: 3'- cUCGUGGUGGUacGGUGua---UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 9923 | 0.68 | 0.385446 |
Target: 5'- uGAuCGCCGCCG-GCCACAU-CGCCg- -3' miRNA: 3'- -CUcGUGGUGGUaCGGUGUAuGCGGga -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 17746 | 0.68 | 0.385446 |
Target: 5'- cGGCACgGCCGcGCgGCugaugGCGCCCg -3' miRNA: 3'- cUCGUGgUGGUaCGgUGua---UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 28143 | 0.69 | 0.367387 |
Target: 5'- cGGCGCCGCCcUGuCCGaggccGCGCCCg -3' miRNA: 3'- cUCGUGGUGGuAC-GGUgua--UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 34520 | 0.69 | 0.367387 |
Target: 5'- -cGC-CCAUCAgGCCGCAgcggAUGCCCg -3' miRNA: 3'- cuCGuGGUGGUaCGGUGUa---UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 39647 | 0.69 | 0.349919 |
Target: 5'- -cGCGCgGCUcgGCCGCuUGcCGCCCg -3' miRNA: 3'- cuCGUGgUGGuaCGGUGuAU-GCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 38487 | 0.69 | 0.349061 |
Target: 5'- cGGGCuGCCGCCguacacaucgucgGUGCCgACGUagaaGCGCCCg -3' miRNA: 3'- -CUCG-UGGUGG-------------UACGG-UGUA----UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 21266 | 0.69 | 0.34141 |
Target: 5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3' miRNA: 3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 24601 | 0.69 | 0.34141 |
Target: 5'- cGGGCGCCAUCA-GCCGC--GCGgCCg -3' miRNA: 3'- -CUCGUGGUGGUaCGGUGuaUGCgGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 35368 | 0.69 | 0.336376 |
Target: 5'- cGGCACCACgCggGCCuGCAgcagcucaugcucgaUGCGCCCg -3' miRNA: 3'- cUCGUGGUG-GuaCGG-UGU---------------AUGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 15279 | 0.69 | 0.33305 |
Target: 5'- cGAGCGuCCGCCGgcgaacgagacUGCCGCAUAC-CUCg -3' miRNA: 3'- -CUCGU-GGUGGU-----------ACGGUGUAUGcGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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