Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28048 | 5' | -56.7 | NC_005887.1 | + | 14820 | 0.7 | 0.316785 |
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Target: 5'- gGAGCGCCGcCCAUgaccgcccGCCGCGUauucACGCCa- -3' miRNA: 3'- -CUCGUGGU-GGUA--------CGGUGUA----UGCGGga -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 27189 | 0.7 | 0.316785 |
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Target: 5'- aGGUACUucGCCAUGCCGuCGaGCGCCUg -3' miRNA: 3'- cUCGUGG--UGGUACGGU-GUaUGCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 31131 | 0.7 | 0.30888 |
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Target: 5'- cGAGCuuGCCgggcagGCCGUG-CGCAUACGCCUg -3' miRNA: 3'- -CUCG--UGG------UGGUACgGUGUAUGCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 513 | 0.7 | 0.286072 |
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Target: 5'- aGGCGCCGCCAgaUCGCGUGgucguCGCCCUu -3' miRNA: 3'- cUCGUGGUGGUacGGUGUAU-----GCGGGA- -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 15082 | 0.73 | 0.20803 |
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Target: 5'- gGAGcCGCCGgCGUGUCGCAgaugAUGCCCg -3' miRNA: 3'- -CUC-GUGGUgGUACGGUGUa---UGCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 8483 | 0.73 | 0.202432 |
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Target: 5'- gGAGCGCUGUCGgcUGCCGCAggcucgUACGCCCUg -3' miRNA: 3'- -CUCGUGGUGGU--ACGGUGU------AUGCGGGA- -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 26732 | 0.73 | 0.181334 |
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Target: 5'- cGAGCccgGCCGCC-UGCUGCGcgACGCCCg -3' miRNA: 3'- -CUCG---UGGUGGuACGGUGUa-UGCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 40360 | 0.75 | 0.136914 |
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Target: 5'- cGAGCGCgGCCGUGCCGCucgucGCGCgCg -3' miRNA: 3'- -CUCGUGgUGGUACGGUGua---UGCGgGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 16302 | 1.07 | 0.000627 |
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Target: 5'- gGAGCACCACCAUGCCACAUACGCCCUu -3' miRNA: 3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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