Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28048 | 5' | -56.7 | NC_005887.1 | + | 23159 | 0.66 | 0.515828 |
Target: 5'- -cGCGCCGCC-UGUCucc-ACGCCCg -3' miRNA: 3'- cuCGUGGUGGuACGGuguaUGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 24601 | 0.69 | 0.34141 |
Target: 5'- cGGGCGCCAUCA-GCCGC--GCGgCCg -3' miRNA: 3'- -CUCGUGGUGGUaCGGUGuaUGCgGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 27189 | 0.7 | 0.316785 |
Target: 5'- aGGUACUucGCCAUGCCGuCGaGCGCCUg -3' miRNA: 3'- cUCGUGG--UGGUACGGU-GUaUGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 16302 | 1.07 | 0.000627 |
Target: 5'- gGAGCACCACCAUGCCACAUACGCCCUu -3' miRNA: 3'- -CUCGUGGUGGUACGGUGUAUGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 9923 | 0.68 | 0.385446 |
Target: 5'- uGAuCGCCGCCG-GCCACAU-CGCCg- -3' miRNA: 3'- -CUcGUGGUGGUaCGGUGUAuGCGGga -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 14820 | 0.7 | 0.316785 |
Target: 5'- gGAGCGCCGcCCAUgaccgcccGCCGCGUauucACGCCa- -3' miRNA: 3'- -CUCGUGGU-GGUA--------CGGUGUA----UGCGGga -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 26732 | 0.73 | 0.181334 |
Target: 5'- cGAGCccgGCCGCC-UGCUGCGcgACGCCCg -3' miRNA: 3'- -CUCG---UGGUGGuACGGUGUa-UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 38487 | 0.69 | 0.349061 |
Target: 5'- cGGGCuGCCGCCguacacaucgucgGUGCCgACGUagaaGCGCCCg -3' miRNA: 3'- -CUCG-UGGUGG-------------UACGG-UGUA----UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 513 | 0.7 | 0.286072 |
Target: 5'- aGGCGCCGCCAgaUCGCGUGgucguCGCCCUu -3' miRNA: 3'- cUCGUGGUGGUacGGUGUAU-----GCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 19076 | 0.66 | 0.526641 |
Target: 5'- cGGGCugCGgCAaccGCCACGagcUGCGCCUUu -3' miRNA: 3'- -CUCGugGUgGUa--CGGUGU---AUGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 11220 | 0.66 | 0.537538 |
Target: 5'- -cGCACgGCC-UGCCcgGCAagcuCGCCCUg -3' miRNA: 3'- cuCGUGgUGGuACGG--UGUau--GCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 8483 | 0.73 | 0.202432 |
Target: 5'- gGAGCGCUGUCGgcUGCCGCAggcucgUACGCCCUg -3' miRNA: 3'- -CUCGUGGUGGU--ACGGUGU------AUGCGGGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 31131 | 0.7 | 0.30888 |
Target: 5'- cGAGCuuGCCgggcagGCCGUG-CGCAUACGCCUg -3' miRNA: 3'- -CUCG--UGG------UGGUACgGUGUAUGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 21266 | 0.69 | 0.34141 |
Target: 5'- gGGGCACCGCgGcgGCgGCGUAUGCgCUg -3' miRNA: 3'- -CUCGUGGUGgUa-CGgUGUAUGCGgGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 24532 | 0.67 | 0.463246 |
Target: 5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3' miRNA: 3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 34520 | 0.69 | 0.367387 |
Target: 5'- -cGC-CCAUCAgGCCGCAgcggAUGCCCg -3' miRNA: 3'- cuCGuGGUGGUaCGGUGUa---UGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 14021 | 0.66 | 0.515828 |
Target: 5'- -cGCaACCGCCGgcgcGCCGCcgGCGCagCCUg -3' miRNA: 3'- cuCG-UGGUGGUa---CGGUGuaUGCG--GGA- -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 30923 | 0.66 | 0.494481 |
Target: 5'- cGGCAUCGCCuuGUGCCAgc-GCGCUCg -3' miRNA: 3'- cUCGUGGUGG--UACGGUguaUGCGGGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 36238 | 0.67 | 0.483959 |
Target: 5'- aGGCACCACUucGCCAgcuCGUGCGCggCCg -3' miRNA: 3'- cUCGUGGUGGuaCGGU---GUAUGCG--GGa -5' |
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28048 | 5' | -56.7 | NC_005887.1 | + | 31176 | 0.67 | 0.433076 |
Target: 5'- -cGCGCCACuUGUGCUcggGCAUGCGCgCg -3' miRNA: 3'- cuCGUGGUG-GUACGG---UGUAUGCGgGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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