Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28049 | 5' | -59.1 | NC_005887.1 | + | 41091 | 0.66 | 0.447281 |
Target: 5'- aGGCGGGuagcuaugcGACGUuuucgCGUgcUGAGCGCCGCGc -3' miRNA: 3'- -CUGCUC---------CUGCA-----GCA--GCUCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 40750 | 0.67 | 0.400675 |
Target: 5'- -uCGAGGcgauCGcCGUUGGcGCGCCGCGc -3' miRNA: 3'- cuGCUCCu---GCaGCAGCU-CGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 39399 | 0.76 | 0.111251 |
Target: 5'- cGGCGAGGAUgGUCG-CGgcGGUGCCGCGGc -3' miRNA: 3'- -CUGCUCCUG-CAGCaGC--UCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 38391 | 0.66 | 0.476648 |
Target: 5'- cGCGAGcaacGGCGg-GUCGAcgagcuucugcGCGCCGCGGa -3' miRNA: 3'- cUGCUC----CUGCagCAGCU-----------CGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 38060 | 0.69 | 0.325017 |
Target: 5'- cGGCGAGGAUGUCGacCucGCG-CGCGAu -3' miRNA: 3'- -CUGCUCCUGCAGCa-GcuCGCgGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 36920 | 0.66 | 0.475653 |
Target: 5'- aGCGGGcGCGUgGUCGcgccggucgcugcGGCGCCGCc- -3' miRNA: 3'- cUGCUCcUGCAgCAGC-------------UCGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 35732 | 0.68 | 0.34901 |
Target: 5'- -cCGAGG-CGUUGUCGgauccGGUGCCGCc- -3' miRNA: 3'- cuGCUCCuGCAGCAGC-----UCGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 35056 | 0.68 | 0.365693 |
Target: 5'- cGCGAGGucgcugcCGUCGUCG-GCgGgCGCGAc -3' miRNA: 3'- cUGCUCCu------GCAGCAGCuCG-CgGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 34699 | 0.67 | 0.391732 |
Target: 5'- aGCGGGcGGCcGUCGUCGcgcuugcgguGCGCgGCGAu -3' miRNA: 3'- cUGCUC-CUG-CAGCAGCu---------CGCGgCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 34316 | 0.66 | 0.476648 |
Target: 5'- -uCGAGcACGUCGUCguacaucgaguuGAGCguaGCCGCGGc -3' miRNA: 3'- cuGCUCcUGCAGCAG------------CUCG---CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 32289 | 0.69 | 0.294968 |
Target: 5'- cACG-GGGCGaUCGUCGGgccagccggcGCGCCGCa- -3' miRNA: 3'- cUGCuCCUGC-AGCAGCU----------CGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 29946 | 0.78 | 0.079573 |
Target: 5'- -uCGGGaucGACGgUGUCGAGCGCCGCGAa -3' miRNA: 3'- cuGCUC---CUGCaGCAGCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 27588 | 0.75 | 0.12085 |
Target: 5'- cGCGAGcGCGcCGUCGAGCGUCGUGu -3' miRNA: 3'- cUGCUCcUGCaGCAGCUCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 27586 | 0.72 | 0.206823 |
Target: 5'- cGGCGAGGugGUCGUaacccGCGuuGCGc -3' miRNA: 3'- -CUGCUCCugCAGCAgcu--CGCggCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 26502 | 0.67 | 0.437717 |
Target: 5'- cGCGcGGGCGUUucccUCGAucGCGCCGCGc -3' miRNA: 3'- cUGCuCCUGCAGc---AGCU--CGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 26223 | 0.67 | 0.400675 |
Target: 5'- uGGCGGGGugGUUG-CGcGCGgCGCa- -3' miRNA: 3'- -CUGCUCCugCAGCaGCuCGCgGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 23786 | 0.66 | 0.486648 |
Target: 5'- cGACGAGcAUGUCGcccgCGAagccgGCGCCGCc- -3' miRNA: 3'- -CUGCUCcUGCAGCa---GCU-----CGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 21053 | 0.67 | 0.428272 |
Target: 5'- cGAC-AGGuuCGUCGUCG-GCGCCGg-- -3' miRNA: 3'- -CUGcUCCu-GCAGCAGCuCGCGGCgcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 18396 | 0.68 | 0.340068 |
Target: 5'- -cCGAGGuCGUCGgugCGuGCgcagacgGCCGCGAg -3' miRNA: 3'- cuGCUCCuGCAGCa--GCuCG-------CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 17275 | 0.74 | 0.15444 |
Target: 5'- gGGCGA-GACGUCGggCG-GCGCCGCGc -3' miRNA: 3'- -CUGCUcCUGCAGCa-GCuCGCGGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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