miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28049 5' -59.1 NC_005887.1 + 41091 0.66 0.447281
Target:  5'- aGGCGGGuagcuaugcGACGUuuucgCGUgcUGAGCGCCGCGc -3'
miRNA:   3'- -CUGCUC---------CUGCA-----GCA--GCUCGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 2640 0.66 0.476648
Target:  5'- gGAUGAGGugG-CGgCGGGCaCuCGCGAu -3'
miRNA:   3'- -CUGCUCCugCaGCaGCUCGcG-GCGCU- -5'
28049 5' -59.1 NC_005887.1 + 11529 0.66 0.476648
Target:  5'- --aGAuGGACGUCGaacuggcCGAG-GCCGCGGu -3'
miRNA:   3'- cugCU-CCUGCAGCa------GCUCgCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 34316 0.66 0.476648
Target:  5'- -uCGAGcACGUCGUCguacaucgaguuGAGCguaGCCGCGGc -3'
miRNA:   3'- cuGCUCcUGCAGCAG------------CUCG---CGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 38391 0.66 0.476648
Target:  5'- cGCGAGcaacGGCGg-GUCGAcgagcuucugcGCGCCGCGGa -3'
miRNA:   3'- cUGCUC----CUGCagCAGCU-----------CGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 23786 0.66 0.486648
Target:  5'- cGACGAGcAUGUCGcccgCGAagccgGCGCCGCc- -3'
miRNA:   3'- -CUGCUCcUGCAGCa---GCU-----CGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 39399 0.76 0.111251
Target:  5'- cGGCGAGGAUgGUCG-CGgcGGUGCCGCGGc -3'
miRNA:   3'- -CUGCUCCUG-CAGCaGC--UCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 27586 0.72 0.206823
Target:  5'- cGGCGAGGugGUCGUaacccGCGuuGCGc -3'
miRNA:   3'- -CUGCUCCugCAGCAgcu--CGCggCGCu -5'
28049 5' -59.1 NC_005887.1 + 38060 0.69 0.325017
Target:  5'- cGGCGAGGAUGUCGacCucGCG-CGCGAu -3'
miRNA:   3'- -CUGCUCCUGCAGCa-GcuCGCgGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 18396 0.68 0.340068
Target:  5'- -cCGAGGuCGUCGgugCGuGCgcagacgGCCGCGAg -3'
miRNA:   3'- cuGCUCCuGCAGCa--GCuCG-------CGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 1810 0.68 0.374239
Target:  5'- cGCGAGcgccaGAcCGUCGUCGcugccgcGCGCCGCGu -3'
miRNA:   3'- cUGCUC-----CU-GCAGCAGCu------CGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 26502 0.67 0.437717
Target:  5'- cGCGcGGGCGUUucccUCGAucGCGCCGCGc -3'
miRNA:   3'- cUGCuCCUGCAGc---AGCU--CGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 2415 0.69 0.325017
Target:  5'- cGCGAuGcGCGUCGUCGAcGCGCC-CGGc -3'
miRNA:   3'- cUGCU-CcUGCAGCAGCU-CGCGGcGCU- -5'
28049 5' -59.1 NC_005887.1 + 26223 0.67 0.400675
Target:  5'- uGGCGGGGugGUUG-CGcGCGgCGCa- -3'
miRNA:   3'- -CUGCUCCugCAGCaGCuCGCgGCGcu -5'
28049 5' -59.1 NC_005887.1 + 35732 0.68 0.34901
Target:  5'- -cCGAGG-CGUUGUCGgauccGGUGCCGCc- -3'
miRNA:   3'- cuGCUCCuGCAGCAGC-----UCGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 2554 0.71 0.22299
Target:  5'- uGCGaAGuGACGacgcgcgcaacgaUCGgcgCGAGCGCCGCGAc -3'
miRNA:   3'- cUGC-UC-CUGC-------------AGCa--GCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 16203 1.09 0.000385
Target:  5'- cGACGAGGACGUCGUCGAGCGCCGCGAa -3'
miRNA:   3'- -CUGCUCCUGCAGCAGCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 9606 0.68 0.382919
Target:  5'- cGCGccGGCG-CGcacgCGAGCGCCGCGc -3'
miRNA:   3'- cUGCucCUGCaGCa---GCUCGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 36920 0.66 0.475653
Target:  5'- aGCGGGcGCGUgGUCGcgccggucgcugcGGCGCCGCc- -3'
miRNA:   3'- cUGCUCcUGCAgCAGC-------------UCGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 6552 0.66 0.455987
Target:  5'- cACGGGGcugucgccGCGcuacaacUCGUUGAGCGCCGaGAa -3'
miRNA:   3'- cUGCUCC--------UGC-------AGCAGCUCGCGGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.