miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 39154 0.67 0.287993
Target:  5'- cGCGGCCcuucucGCuGuC-CGGGCGCGGCa-- -3'
miRNA:   3'- -CGCCGGu-----CG-CuGaGCCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 28336 0.68 0.267168
Target:  5'- gGCGcGCCGGCGguuGCggaGGcGCGCGGCg-- -3'
miRNA:   3'- -CGC-CGGUCGC---UGag-CC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 13892 0.68 0.260503
Target:  5'- aGCGGCCcggcaacaAGcCGACgaaGGGU-CAGCUUCg -3'
miRNA:   3'- -CGCCGG--------UC-GCUGag-CCCGcGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 12653 0.68 0.253973
Target:  5'- aCGGCgAGUGGCUgCGcGUGCAGCUg- -3'
miRNA:   3'- cGCCGgUCGCUGA-GCcCGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 29505 0.68 0.253973
Target:  5'- gGCGGCCu-CGACggCGGGCGCguuguagaacAGCacgUCg -3'
miRNA:   3'- -CGCCGGucGCUGa-GCCCGCG----------UCGa--AG- -5'
28051 3' -60.9 NC_005887.1 + 26401 0.68 0.253973
Target:  5'- aGCGGCguGCGGCgCGuGGC-CGGCgcaUCg -3'
miRNA:   3'- -CGCCGguCGCUGaGC-CCGcGUCGa--AG- -5'
28051 3' -60.9 NC_005887.1 + 36842 0.68 0.253973
Target:  5'- uGCGGCCGGUG-CUgCGGcCGguGCUg- -3'
miRNA:   3'- -CGCCGGUCGCuGA-GCCcGCguCGAag -5'
28051 3' -60.9 NC_005887.1 + 22244 0.68 0.253327
Target:  5'- cGUGGUucacgauCAGCGACggUGGcGCGCAGCa-- -3'
miRNA:   3'- -CGCCG-------GUCGCUGa-GCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 1997 0.68 0.247578
Target:  5'- cCGGCCGGCuACUaCGaGCGCGGCa-- -3'
miRNA:   3'- cGCCGGUCGcUGA-GCcCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 41790 0.68 0.247578
Target:  5'- cUGGCCGGCGGucUUCGcgcuguauccGGCGCGGCg-- -3'
miRNA:   3'- cGCCGGUCGCU--GAGC----------CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 36590 0.68 0.235189
Target:  5'- cGCGGCCAGCGcCUU---CGCGGCcUCg -3'
miRNA:   3'- -CGCCGGUCGCuGAGcccGCGUCGaAG- -5'
28051 3' -60.9 NC_005887.1 + 27368 0.68 0.235189
Target:  5'- uGCGGCCugcGCGGCcugCGcGGCGUAgGCgUCg -3'
miRNA:   3'- -CGCCGGu--CGCUGa--GC-CCGCGU-CGaAG- -5'
28051 3' -60.9 NC_005887.1 + 14207 0.69 0.217585
Target:  5'- cGCGGCCucggacagGGCGGCgccgCGcuguucGGCGCGGCaUCc -3'
miRNA:   3'- -CGCCGG--------UCGCUGa---GC------CCGCGUCGaAG- -5'
28051 3' -60.9 NC_005887.1 + 37336 0.69 0.217585
Target:  5'- uCGGUCuGCGcCUcggCGGGCGUgAGCUUCa -3'
miRNA:   3'- cGCCGGuCGCuGA---GCCCGCG-UCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 27827 0.69 0.214202
Target:  5'- aGCGGCUuucaCGACUucgccccuucgggaaCGGuGCGCAGCUUUu -3'
miRNA:   3'- -CGCCGGuc--GCUGA---------------GCC-CGCGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 2205 0.69 0.211972
Target:  5'- cGCGGCgAGCG---CGGcGCGCAGCg-- -3'
miRNA:   3'- -CGCCGgUCGCugaGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 26335 0.69 0.206485
Target:  5'- cGUGGCCGGCGcugGC-CGGGUGC-GCg-- -3'
miRNA:   3'- -CGCCGGUCGC---UGaGCCCGCGuCGaag -5'
28051 3' -60.9 NC_005887.1 + 38642 0.69 0.20112
Target:  5'- cGCGGUCGGCGcgcgGCUCGacGGCGUGGUa-- -3'
miRNA:   3'- -CGCCGGUCGC----UGAGC--CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 11001 0.69 0.20112
Target:  5'- aUGGCgUGGUG-CUCGGGUGCGGCggUCu -3'
miRNA:   3'- cGCCG-GUCGCuGAGCCCGCGUCGa-AG- -5'
28051 3' -60.9 NC_005887.1 + 23251 0.7 0.195877
Target:  5'- gGCGGUCGGCGcGCaaaaGGCGCAGCUc- -3'
miRNA:   3'- -CGCCGGUCGC-UGagc-CCGCGUCGAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.