miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 8701 0.7 0.299809
Target:  5'- aUGAAacCCUCGCCGaGCGCAgCGcgCGCUa -3'
miRNA:   3'- -ACUU--GGAGUGGC-CGUGUgGCa-GCGGc -5'
28052 5' -58.3 NC_005887.1 + 8857 0.66 0.516681
Target:  5'- gUGAAC---GCCGGCGCGCCcGUcgagaucgcgaCGCCGu -3'
miRNA:   3'- -ACUUGgagUGGCCGUGUGG-CA-----------GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8966 0.67 0.445987
Target:  5'- aUGAGCCUCAuCCuGCcCGCCGgCGCg- -3'
miRNA:   3'- -ACUUGGAGU-GGcCGuGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 9517 0.66 0.514594
Target:  5'- cGAACaccgucgucacgCUCACCGGCACcuacaaaugggcCCGaUCGCUGu -3'
miRNA:   3'- aCUUG------------GAGUGGCCGUGu-----------GGC-AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 9588 0.74 0.157698
Target:  5'- cGAGCCggcugcauggcgcgCGCCGGCGCGCaCGcgagCGCCGc -3'
miRNA:   3'- aCUUGGa-------------GUGGCCGUGUG-GCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 9916 0.72 0.220832
Target:  5'- cGcAACCUgaucgcCGCCGGcCACAUCGcCGCCGg -3'
miRNA:   3'- aC-UUGGA------GUGGCC-GUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 10459 0.75 0.121731
Target:  5'- --uGCCUgACCGGCugGCCGaCGCCc -3'
miRNA:   3'- acuUGGAgUGGCCGugUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 10899 0.69 0.346846
Target:  5'- gUGcACCUgcaGCCGGCGCAgaugaCGUCgGCCGg -3'
miRNA:   3'- -ACuUGGAg--UGGCCGUGUg----GCAG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 11040 0.73 0.18346
Target:  5'- gGGACgUgacCACCGGUGCGCCGaUGCCGg -3'
miRNA:   3'- aCUUGgA---GUGGCCGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 11583 0.69 0.346846
Target:  5'- aGGAaCUCGCCGcGCGCACgGUCgaGCUGa -3'
miRNA:   3'- aCUUgGAGUGGC-CGUGUGgCAG--CGGC- -5'
28052 5' -58.3 NC_005887.1 + 11715 0.68 0.398934
Target:  5'- aGAucGCUUCGCCGcGCGCACgGcgCGCaCGa -3'
miRNA:   3'- aCU--UGGAGUGGC-CGUGUGgCa-GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 12068 0.67 0.436327
Target:  5'- cGAACgUCguGCgCGGCACgAUCGUcgCGCCGg -3'
miRNA:   3'- aCUUGgAG--UG-GCCGUG-UGGCA--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 12209 0.69 0.346846
Target:  5'- aGcGCCgCGCCgGGCGCGCCGgauuucaCGCCa -3'
miRNA:   3'- aCuUGGaGUGG-CCGUGUGGCa------GCGGc -5'
28052 5' -58.3 NC_005887.1 + 13035 0.68 0.381022
Target:  5'- cGAGCagaucCACaCGGC-CAgCGUCGCCGc -3'
miRNA:   3'- aCUUGga---GUG-GCCGuGUgGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 13297 0.66 0.488822
Target:  5'- cUGAACCagAUCGGCcaggcguucggcaACGCCGgccgcaucgcggaucUCGCCGc -3'
miRNA:   3'- -ACUUGGagUGGCCG-------------UGUGGC---------------AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 13406 0.66 0.485769
Target:  5'- cGGACgUCGgCGGCAaGCCGcUGCUGa -3'
miRNA:   3'- aCUUGgAGUgGCCGUgUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14013 0.72 0.208984
Target:  5'- cGcGCCUCcgcaaccGCCGGCGCGCCGcCGgCGc -3'
miRNA:   3'- aCuUGGAG-------UGGCCGUGUGGCaGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 14303 0.67 0.445987
Target:  5'- cUGAACC-CGCaagcGCAgGCCGaCGCCGa -3'
miRNA:   3'- -ACUUGGaGUGgc--CGUgUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14556 0.69 0.307294
Target:  5'- ---cCCUCGCCuGCgucgGCGCCGUCGUCa -3'
miRNA:   3'- acuuGGAGUGGcCG----UGUGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 14591 0.73 0.18346
Target:  5'- --uACCUCGCCGGCGCGCuCGgcaUCgGCCa -3'
miRNA:   3'- acuUGGAGUGGCCGUGUG-GC---AG-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.