miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 4692 0.71 0.251352
Target:  5'- aGggUCUgAUgGGCGCGCCGaUCaGCCGa -3'
miRNA:   3'- aCuuGGAgUGgCCGUGUGGC-AG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 23980 0.71 0.251352
Target:  5'- cGAGC---GCCGGCGCGCCGUCuaCGc -3'
miRNA:   3'- aCUUGgagUGGCCGUGUGGCAGcgGC- -5'
28052 5' -58.3 NC_005887.1 + 1571 0.71 0.257859
Target:  5'- cGAACCUCgaccGCCGGCucggcgGCGCgCGgcgCGCCa -3'
miRNA:   3'- aCUUGGAG----UGGCCG------UGUG-GCa--GCGGc -5'
28052 5' -58.3 NC_005887.1 + 2442 0.7 0.271284
Target:  5'- aUGAcACCUCGCUGcGCuacgGCGCCGUCGaCGa -3'
miRNA:   3'- -ACU-UGGAGUGGC-CG----UGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 40751 0.7 0.285265
Target:  5'- cGAGgCgaUCGCCguuGGCGCGCCGcgCGCCGc -3'
miRNA:   3'- aCUUgG--AGUGG---CCGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37950 0.7 0.292467
Target:  5'- cGcGCCuUCGCCGGCGCGCa-UUGCCu -3'
miRNA:   3'- aCuUGG-AGUGGCCGUGUGgcAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 28960 0.7 0.299809
Target:  5'- cGAcguccGCCgCGCCGGCcuucagcgcgaGCGCCaUCGCCGg -3'
miRNA:   3'- aCU-----UGGaGUGGCCG-----------UGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8701 0.7 0.299809
Target:  5'- aUGAAacCCUCGCCGaGCGCAgCGcgCGCUa -3'
miRNA:   3'- -ACUU--GGAGUGGC-CGUGUgGCa-GCGGc -5'
28052 5' -58.3 NC_005887.1 + 2159 0.69 0.306539
Target:  5'- -cGACCUgGCCGGCGgcgauucccuucgUGCCGUCGCg- -3'
miRNA:   3'- acUUGGAgUGGCCGU-------------GUGGCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 20827 0.69 0.306539
Target:  5'- gUGAAUUUC-CCGGCagccggcgucguuGCGCCGaUUGCCGg -3'
miRNA:   3'- -ACUUGGAGuGGCCG-------------UGUGGC-AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14556 0.69 0.307294
Target:  5'- ---cCCUCGCCuGCgucgGCGCCGUCGUCa -3'
miRNA:   3'- acuuGGAGUGGcCG----UGUGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37107 0.69 0.307294
Target:  5'- -cAGCCUCGgCGaucGCGCgGCCGUCGCCc -3'
miRNA:   3'- acUUGGAGUgGC---CGUG-UGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 34267 0.69 0.322688
Target:  5'- -cAGCgCUCGCgGcuugcGCAUGCCGUCGCCGu -3'
miRNA:   3'- acUUG-GAGUGgC-----CGUGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37715 0.69 0.322688
Target:  5'- aGAuCCUugaucgCGCCGGCGgcCACCGgCGCCGc -3'
miRNA:   3'- aCUuGGA------GUGGCCGU--GUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 32303 0.69 0.338652
Target:  5'- cGGGCCa-GCCGGCGCGCCGcagUGCg- -3'
miRNA:   3'- aCUUGGagUGGCCGUGUGGCa--GCGgc -5'
28052 5' -58.3 NC_005887.1 + 11583 0.69 0.346846
Target:  5'- aGGAaCUCGCCGcGCGCACgGUCgaGCUGa -3'
miRNA:   3'- aCUUgGAGUGGC-CGUGUGgCAG--CGGC- -5'
28052 5' -58.3 NC_005887.1 + 36418 0.69 0.346846
Target:  5'- cGAucACCUCGCCcGaCACACCGaacuugcgcaUCGCCu -3'
miRNA:   3'- aCU--UGGAGUGGcC-GUGUGGC----------AGCGGc -5'
28052 5' -58.3 NC_005887.1 + 10899 0.69 0.346846
Target:  5'- gUGcACCUgcaGCCGGCGCAgaugaCGUCgGCCGg -3'
miRNA:   3'- -ACuUGGAg--UGGCCGUGUg----GCAG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 29740 0.69 0.346846
Target:  5'- cGGGCUUCugCGucaGCACGCCGagCGUCGc -3'
miRNA:   3'- aCUUGGAGugGC---CGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 12209 0.69 0.346846
Target:  5'- aGcGCCgCGCCgGGCGCGCCGgauuucaCGCCa -3'
miRNA:   3'- aCuUGGaGUGG-CCGUGUGGCa------GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.