miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 15371 1.09 0.000396
Target:  5'- gUGAACCUCACCGGCACACCGUCGCCGa -3'
miRNA:   3'- -ACUUGGAGUGGCCGUGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 16235 0.77 0.097283
Target:  5'- cGAuacGCCg-GCCGGCgagcgcacggGCACCGUCGCCGa -3'
miRNA:   3'- aCU---UGGagUGGCCG----------UGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8601 0.76 0.118388
Target:  5'- aGAugCUCgugaagGCCGGCGCGCUGauccUCGCCGc -3'
miRNA:   3'- aCUugGAG------UGGCCGUGUGGC----AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 10459 0.75 0.121731
Target:  5'- --uGCCUgACCGGCugGCCGaCGCCc -3'
miRNA:   3'- acuUGGAgUGGCCGugUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 735 0.74 0.143695
Target:  5'- aGAuCCUCACgGGcCGCGCCGgcCGCCGc -3'
miRNA:   3'- aCUuGGAGUGgCC-GUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 28274 0.74 0.143695
Target:  5'- cGAGCaUCAUCGGCACGCCGagCGCgCGc -3'
miRNA:   3'- aCUUGgAGUGGCCGUGUGGCa-GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 9588 0.74 0.157698
Target:  5'- cGAGCCggcugcauggcgcgCGCCGGCGCGCaCGcgagCGCCGc -3'
miRNA:   3'- aCUUGGa-------------GUGGCCGUGUG-GCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 33866 0.74 0.164705
Target:  5'- cGAGCCUgcggcaGCCGacaGCGCuCCGUCGCCGu -3'
miRNA:   3'- aCUUGGAg-----UGGC---CGUGuGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14591 0.73 0.18346
Target:  5'- --uACCUCGCCGGCGCGCuCGgcaUCgGCCa -3'
miRNA:   3'- acuUGGAGUGGCCGUGUG-GC---AG-CGGc -5'
28052 5' -58.3 NC_005887.1 + 11040 0.73 0.18346
Target:  5'- gGGACgUgacCACCGGUGCGCCGaUGCCGg -3'
miRNA:   3'- aCUUGgA---GUGGCCGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37570 0.73 0.195599
Target:  5'- -cGGCCUCGCCGGCuggcgucagcuucccGCGCuCGUCGCa- -3'
miRNA:   3'- acUUGGAGUGGCCG---------------UGUG-GCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 14013 0.72 0.208984
Target:  5'- cGcGCCUCcgcaaccGCCGGCGCGCCGcCGgCGc -3'
miRNA:   3'- aCuUGGAG-------UGGCCGUGUGGCaGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 4615 0.72 0.209536
Target:  5'- aGAugCUCGCCGcgGCGCCGguggcCGCCGg -3'
miRNA:   3'- aCUugGAGUGGCcgUGUGGCa----GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 27698 0.72 0.21512
Target:  5'- cGAACCggCgACgGGCAgCACCG-CGCCGg -3'
miRNA:   3'- aCUUGGa-G-UGgCCGU-GUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 9916 0.72 0.220832
Target:  5'- cGcAACCUgaucgcCGCCGGcCACAUCGcCGCCGg -3'
miRNA:   3'- aC-UUGGA------GUGGCC-GUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 20089 0.72 0.220832
Target:  5'- cGAucGCCUgCugCGcGC-CACCGUCGCUGa -3'
miRNA:   3'- aCU--UGGA-GugGC-CGuGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14631 0.72 0.226083
Target:  5'- aGGGCgcgCUCacggcaGCCGGCGCGgugcugcCCGUCGCCGg -3'
miRNA:   3'- aCUUG---GAG------UGGCCGUGU-------GGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 18813 0.71 0.232643
Target:  5'- gGAcaACCUCGCCGaGaAC-CUGUCGCCGg -3'
miRNA:   3'- aCU--UGGAGUGGC-CgUGuGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 7703 0.71 0.238746
Target:  5'- -aAACCggcaaGCCGGCGCGCC-UCGUCGa -3'
miRNA:   3'- acUUGGag---UGGCCGUGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 25651 0.71 0.244982
Target:  5'- uUGAGCUUCACCGccagcCGCAgCgCGUCGCCa -3'
miRNA:   3'- -ACUUGGAGUGGCc----GUGU-G-GCAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.