miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 37333 0.68 0.363656
Target:  5'- aGcGCCggCACUGGCAU-CgGUCGCCGc -3'
miRNA:   3'- aCuUGGa-GUGGCCGUGuGgCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 34267 0.69 0.322688
Target:  5'- -cAGCgCUCGCgGcuugcGCAUGCCGUCGCCGu -3'
miRNA:   3'- acUUG-GAGUGgC-----CGUGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 32303 0.69 0.338652
Target:  5'- cGGGCCa-GCCGGCGCGCCGcagUGCg- -3'
miRNA:   3'- aCUUGGagUGGCCGUGUGGCa--GCGgc -5'
28052 5' -58.3 NC_005887.1 + 10899 0.69 0.346846
Target:  5'- gUGcACCUgcaGCCGGCGCAgaugaCGUCgGCCGg -3'
miRNA:   3'- -ACuUGGAg--UGGCCGUGUg----GCAG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 12209 0.69 0.346846
Target:  5'- aGcGCCgCGCCgGGCGCGCCGgauuucaCGCCa -3'
miRNA:   3'- aCuUGGaGUGG-CCGUGUGGCa------GCGGc -5'
28052 5' -58.3 NC_005887.1 + 529 0.68 0.355181
Target:  5'- cUGAACgCgUCgGCCGccGCGCGCCG-CGCCGg -3'
miRNA:   3'- -ACUUG-G-AG-UGGC--CGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 31302 0.68 0.355181
Target:  5'- -cGACCggCAUCGGCGCACCgGUgGUCa -3'
miRNA:   3'- acUUGGa-GUGGCCGUGUGG-CAgCGGc -5'
28052 5' -58.3 NC_005887.1 + 41281 0.68 0.355181
Target:  5'- -cGACCUgcgCACgGGCGCGCUGcugcCGCCGg -3'
miRNA:   3'- acUUGGA---GUGgCCGUGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 20049 0.68 0.363656
Target:  5'- cUGAACCacaaagUCACCcGCACAUCGg-GCCGu -3'
miRNA:   3'- -ACUUGG------AGUGGcCGUGUGGCagCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37107 0.69 0.307294
Target:  5'- -cAGCCUCGgCGaucGCGCgGCCGUCGCCc -3'
miRNA:   3'- acUUGGAGUgGC---CGUG-UGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 40751 0.7 0.285265
Target:  5'- cGAGgCgaUCGCCguuGGCGCGCCGcgCGCCGc -3'
miRNA:   3'- aCUUgG--AGUGG---CCGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 2442 0.7 0.271284
Target:  5'- aUGAcACCUCGCUGcGCuacgGCGCCGUCGaCGa -3'
miRNA:   3'- -ACU-UGGAGUGGC-CG----UGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 28274 0.74 0.143695
Target:  5'- cGAGCaUCAUCGGCACGCCGagCGCgCGc -3'
miRNA:   3'- aCUUGgAGUGGCCGUGUGGCa-GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 33866 0.74 0.164705
Target:  5'- cGAGCCUgcggcaGCCGacaGCGCuCCGUCGCCGu -3'
miRNA:   3'- aCUUGGAg-----UGGC---CGUGuGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14013 0.72 0.208984
Target:  5'- cGcGCCUCcgcaaccGCCGGCGCGCCGcCGgCGc -3'
miRNA:   3'- aCuUGGAG-------UGGCCGUGUGGCaGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 4615 0.72 0.209536
Target:  5'- aGAugCUCGCCGcgGCGCCGguggcCGCCGg -3'
miRNA:   3'- aCUugGAGUGGCcgUGUGGCa----GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 14631 0.72 0.226083
Target:  5'- aGGGCgcgCUCacggcaGCCGGCGCGgugcugcCCGUCGCCGg -3'
miRNA:   3'- aCUUG---GAG------UGGCCGUGU-------GGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 18813 0.71 0.232643
Target:  5'- gGAcaACCUCGCCGaGaAC-CUGUCGCCGg -3'
miRNA:   3'- aCU--UGGAGUGGC-CgUGuGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 25651 0.71 0.244982
Target:  5'- uUGAGCUUCACCGccagcCGCAgCgCGUCGCCa -3'
miRNA:   3'- -ACUUGGAGUGGCc----GUGU-G-GCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 4692 0.71 0.251352
Target:  5'- aGggUCUgAUgGGCGCGCCGaUCaGCCGa -3'
miRNA:   3'- aCuuGGAgUGgCCGUGUGGC-AG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.