miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 27086 0.66 0.516681
Target:  5'- cGGACgCUCGCCGcgcaGCACugCGgcuGCCu -3'
miRNA:   3'- aCUUG-GAGUGGC----CGUGugGCag-CGGc -5'
28052 5' -58.3 NC_005887.1 + 6318 0.67 0.408089
Target:  5'- uUGcGCCUCGCCGGCGCcgaGgUGaCGCUGc -3'
miRNA:   3'- -ACuUGGAGUGGCCGUG---UgGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 19095 0.68 0.398934
Target:  5'- cGAGCUgCGCCuuuuGCGCGCCGacCGCCGc -3'
miRNA:   3'- aCUUGGaGUGGc---CGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 15371 1.09 0.000396
Target:  5'- gUGAACCUCACCGGCACACCGUCGCCGa -3'
miRNA:   3'- -ACUUGGAGUGGCCGUGUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40497 0.66 0.485769
Target:  5'- aGAACCaguggUCcgaguCCGGCGCGuucgUGUCGCCGa -3'
miRNA:   3'- aCUUGG-----AGu----GGCCGUGUg---GCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 19561 0.66 0.475661
Target:  5'- gUGAACaaCAgCGGcCGCGCCGgCGUCGa -3'
miRNA:   3'- -ACUUGgaGUgGCC-GUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37777 0.67 0.455765
Target:  5'- cUGcGCCUCGgCGGCuuGCUG-CGCCu -3'
miRNA:   3'- -ACuUGGAGUgGCCGugUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 8966 0.67 0.445987
Target:  5'- aUGAGCCUCAuCCuGCcCGCCGgCGCg- -3'
miRNA:   3'- -ACUUGGAGU-GGcCGuGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 8578 0.67 0.436327
Target:  5'- gUGGAag-C-CCGGCACGCCG-CGCCn -3'
miRNA:   3'- -ACUUggaGuGGCCGUGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 24713 0.67 0.417375
Target:  5'- cUGcAGCUUCACgGcGCugACCGUCGUg- -3'
miRNA:   3'- -AC-UUGGAGUGgC-CGugUGGCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 40270 0.67 0.426789
Target:  5'- cGggUg-CACCGGCuuGCCGUCGaCGa -3'
miRNA:   3'- aCuuGgaGUGGCCGugUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 12068 0.67 0.436327
Target:  5'- cGAACgUCguGCgCGGCACgAUCGUcgCGCCGg -3'
miRNA:   3'- aCUUGgAG--UG-GCCGUG-UGGCA--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5956 0.66 0.506285
Target:  5'- aUGAACCagacCACCauCGCgGCCGUCGUCGa -3'
miRNA:   3'- -ACUUGGa---GUGGccGUG-UGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 16128 0.67 0.421126
Target:  5'- cGGACC-CgugcgccagcugcagGCCGGC-CACCGcCGCCc -3'
miRNA:   3'- aCUUGGaG---------------UGGCCGuGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 6464 0.66 0.495979
Target:  5'- -cGACCUgaagUACgGGCGCGgCGUCGCgGu -3'
miRNA:   3'- acUUGGA----GUGgCCGUGUgGCAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 25951 0.67 0.445987
Target:  5'- gUGAGCUUCcgGCCGGCG-GCCGUC-UCGa -3'
miRNA:   3'- -ACUUGGAG--UGGCCGUgUGGCAGcGGC- -5'
28052 5' -58.3 NC_005887.1 + 17467 0.67 0.417375
Target:  5'- -aGACCgagCGCgCGGCAUcgGCCGcCGCCu -3'
miRNA:   3'- acUUGGa--GUG-GCCGUG--UGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 22856 0.68 0.398934
Target:  5'- cGAugCUCGCCGGCaucgggaucaGCACuUGUUGaCCa -3'
miRNA:   3'- aCUugGAGUGGCCG----------UGUG-GCAGC-GGc -5'
28052 5' -58.3 NC_005887.1 + 30792 0.66 0.485769
Target:  5'- cGAuuCCgcgacCGCCGcGCGCugCG-CGCCGa -3'
miRNA:   3'- aCUu-GGa----GUGGC-CGUGugGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5365 0.66 0.475661
Target:  5'- -cGugCUCGCCGGCGagcucgaccCGCgCGaCGCCGa -3'
miRNA:   3'- acUugGAGUGGCCGU---------GUG-GCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.