miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 41390 0.68 0.389911
Target:  5'- cGAucACCUCguGCU-GCACGCCuUCGCCGa -3'
miRNA:   3'- aCU--UGGAG--UGGcCGUGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 19095 0.68 0.398934
Target:  5'- cGAGCUgCGCCuuuuGCGCGCCGacCGCCGc -3'
miRNA:   3'- aCUUGGaGUGGc---CGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 12068 0.67 0.436327
Target:  5'- cGAACgUCguGCgCGGCACgAUCGUcgCGCCGg -3'
miRNA:   3'- aCUUGgAG--UG-GCCGUG-UGGCA--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 30792 0.66 0.485769
Target:  5'- cGAuuCCgcgacCGCCGcGCGCugCG-CGCCGa -3'
miRNA:   3'- aCUu-GGa----GUGGC-CGUGugGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37715 0.69 0.322688
Target:  5'- aGAuCCUugaucgCGCCGGCGgcCACCGgCGCCGc -3'
miRNA:   3'- aCUuGGA------GUGGCCGU--GUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 25489 0.68 0.363656
Target:  5'- cGAGCCguccgCGCCgcGGUACACC-UCGCgGa -3'
miRNA:   3'- aCUUGGa----GUGG--CCGUGUGGcAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 6318 0.67 0.408089
Target:  5'- uUGcGCCUCGCCGGCGCcgaGgUGaCGCUGc -3'
miRNA:   3'- -ACuUGGAGUGGCCGUG---UgGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 6464 0.66 0.495979
Target:  5'- -cGACCUgaagUACgGGCGCGgCGUCGCgGu -3'
miRNA:   3'- acUUGGA----GUGgCCGUGUgGCAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 36954 0.68 0.363656
Target:  5'- --cGCC-CGCCGGUuCACCGgucgCGCUGg -3'
miRNA:   3'- acuUGGaGUGGCCGuGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5956 0.66 0.506285
Target:  5'- aUGAACCagacCACCauCGCgGCCGUCGUCGa -3'
miRNA:   3'- -ACUUGGa---GUGGccGUG-UGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 22856 0.68 0.398934
Target:  5'- cGAugCUCGCCGGCaucgggaucaGCACuUGUUGaCCa -3'
miRNA:   3'- aCUugGAGUGGCCG----------UGUG-GCAGC-GGc -5'
28052 5' -58.3 NC_005887.1 + 27993 0.68 0.389911
Target:  5'- cGAACaggugC-CCGGCACGCUGcuucacgaUCGCCGc -3'
miRNA:   3'- aCUUGga---GuGGCCGUGUGGC--------AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 16128 0.67 0.421126
Target:  5'- cGGACC-CgugcgccagcugcagGCCGGC-CACCGcCGCCc -3'
miRNA:   3'- aCUUGGaG---------------UGGCCGuGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 8578 0.67 0.436327
Target:  5'- gUGGAag-C-CCGGCACGCCG-CGCCn -3'
miRNA:   3'- -ACUUggaGuGGCCGUGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37777 0.67 0.455765
Target:  5'- cUGcGCCUCGgCGGCuuGCUG-CGCCu -3'
miRNA:   3'- -ACuUGGAGUgGCCGugUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 40497 0.66 0.485769
Target:  5'- aGAACCaguggUCcgaguCCGGCGCGuucgUGUCGCCGa -3'
miRNA:   3'- aCUUGG-----AGu----GGCCGUGUg---GCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8701 0.7 0.299809
Target:  5'- aUGAAacCCUCGCCGaGCGCAgCGcgCGCUa -3'
miRNA:   3'- -ACUU--GGAGUGGC-CGUGUgGCa-GCGGc -5'
28052 5' -58.3 NC_005887.1 + 14556 0.69 0.307294
Target:  5'- ---cCCUCGCCuGCgucgGCGCCGUCGUCa -3'
miRNA:   3'- acuuGGAGUGGcCG----UGUGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 36418 0.69 0.346846
Target:  5'- cGAucACCUCGCCcGaCACACCGaacuugcgcaUCGCCu -3'
miRNA:   3'- aCU--UGGAGUGGcC-GUGUGGC----------AGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37197 0.68 0.355181
Target:  5'- -cAGCaUCAgCGGCGCGCCGaCGUCGg -3'
miRNA:   3'- acUUGgAGUgGCCGUGUGGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.