miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 529 0.68 0.355181
Target:  5'- cUGAACgCgUCgGCCGccGCGCGCCG-CGCCGg -3'
miRNA:   3'- -ACUUG-G-AG-UGGC--CGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 735 0.74 0.143695
Target:  5'- aGAuCCUCACgGGcCGCGCCGgcCGCCGc -3'
miRNA:   3'- aCUuGGAGUGgCC-GUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 834 0.69 0.346846
Target:  5'- cGGAUCUUGCCGaGCACcgucgacuuGCCGUUcgaGCCGg -3'
miRNA:   3'- aCUUGGAGUGGC-CGUG---------UGGCAG---CGGC- -5'
28052 5' -58.3 NC_005887.1 + 1571 0.71 0.257859
Target:  5'- cGAACCUCgaccGCCGGCucggcgGCGCgCGgcgCGCCa -3'
miRNA:   3'- aCUUGGAG----UGGCCG------UGUG-GCa--GCGGc -5'
28052 5' -58.3 NC_005887.1 + 2159 0.69 0.306539
Target:  5'- -cGACCUgGCCGGCGgcgauucccuucgUGCCGUCGCg- -3'
miRNA:   3'- acUUGGAgUGGCCGU-------------GUGGCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 2442 0.7 0.271284
Target:  5'- aUGAcACCUCGCUGcGCuacgGCGCCGUCGaCGa -3'
miRNA:   3'- -ACU-UGGAGUGGC-CG----UGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 2962 0.68 0.389911
Target:  5'- cGAccauCCUCGCCGGCgacuccACGuCCGUCGUUc -3'
miRNA:   3'- aCUu---GGAGUGGCCG------UGU-GGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 4615 0.72 0.209536
Target:  5'- aGAugCUCGCCGcgGCGCCGguggcCGCCGg -3'
miRNA:   3'- aCUugGAGUGGCcgUGUGGCa----GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 4692 0.71 0.251352
Target:  5'- aGggUCUgAUgGGCGCGCCGaUCaGCCGa -3'
miRNA:   3'- aCuuGGAgUGgCCGUGUGGC-AG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 5365 0.66 0.475661
Target:  5'- -cGugCUCGCCGGCGagcucgaccCGCgCGaCGCCGa -3'
miRNA:   3'- acUugGAGUGGCCGU---------GUG-GCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5502 0.66 0.516681
Target:  5'- -cGGCCgcagCACCGGCcgcaGCACCG--GCCGc -3'
miRNA:   3'- acUUGGa---GUGGCCG----UGUGGCagCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5956 0.66 0.506285
Target:  5'- aUGAACCagacCACCauCGCgGCCGUCGUCGa -3'
miRNA:   3'- -ACUUGGa---GUGGccGUG-UGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 6318 0.67 0.408089
Target:  5'- uUGcGCCUCGCCGGCGCcgaGgUGaCGCUGc -3'
miRNA:   3'- -ACuUGGAGUGGCCGUG---UgGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 6464 0.66 0.495979
Target:  5'- -cGACCUgaagUACgGGCGCGgCGUCGCgGu -3'
miRNA:   3'- acUUGGA----GUGgCCGUGUgGCAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 6653 0.69 0.346846
Target:  5'- gUGGAUCUCggaaaccgcgaaGCCGGC-CGCCGaUCGCgCGc -3'
miRNA:   3'- -ACUUGGAG------------UGGCCGuGUGGC-AGCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 7010 0.68 0.398934
Target:  5'- gUGAAgCUCgugGCCGGC-CGCCGcggCGCgCGg -3'
miRNA:   3'- -ACUUgGAG---UGGCCGuGUGGCa--GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 7703 0.71 0.238746
Target:  5'- -aAACCggcaaGCCGGCGCGCC-UCGUCGa -3'
miRNA:   3'- acUUGGag---UGGCCGUGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8103 0.66 0.485769
Target:  5'- cGcAgCUCGCCGcGCuCGCCGaggCGCCGc -3'
miRNA:   3'- aCuUgGAGUGGC-CGuGUGGCa--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8578 0.67 0.436327
Target:  5'- gUGGAag-C-CCGGCACGCCG-CGCCn -3'
miRNA:   3'- -ACUUggaGuGGCCGUGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 8601 0.76 0.118388
Target:  5'- aGAugCUCgugaagGCCGGCGCGCUGauccUCGCCGc -3'
miRNA:   3'- aCUugGAG------UGGCCGUGUGGC----AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.