miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 41436 0.66 0.489841
Target:  5'- aGcGCCUCGugggcuaugcgcugcUCGGCACGCCG-CGCg- -3'
miRNA:   3'- aCuUGGAGU---------------GGCCGUGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 41390 0.68 0.389911
Target:  5'- cGAucACCUCguGCU-GCACGCCuUCGCCGa -3'
miRNA:   3'- aCU--UGGAG--UGGcCGUGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 41281 0.68 0.355181
Target:  5'- -cGACCUgcgCACgGGCGCGCUGcugcCGCCGg -3'
miRNA:   3'- acUUGGA---GUGgCCGUGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40860 0.68 0.37227
Target:  5'- -cGGCCgCGCCGcgcgagcgccGCACGCCGUCGgCGu -3'
miRNA:   3'- acUUGGaGUGGC----------CGUGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 40852 0.67 0.408089
Target:  5'- cGGAUC-CACCGGCGaagcCGCCGcgcgCGUCGa -3'
miRNA:   3'- aCUUGGaGUGGCCGU----GUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40751 0.7 0.285265
Target:  5'- cGAGgCgaUCGCCguuGGCGCGCCGcgCGCCGc -3'
miRNA:   3'- aCUUgG--AGUGG---CCGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40497 0.66 0.485769
Target:  5'- aGAACCaguggUCcgaguCCGGCGCGuucgUGUCGCCGa -3'
miRNA:   3'- aCUUGG-----AGu----GGCCGUGUg---GCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40270 0.67 0.426789
Target:  5'- cGggUg-CACCGGCuuGCCGUCGaCGa -3'
miRNA:   3'- aCuuGgaGUGGCCGugUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 38222 0.68 0.381022
Target:  5'- aGAACC--ACUGGUugAUCGUCuGCCGc -3'
miRNA:   3'- aCUUGGagUGGCCGugUGGCAG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 37950 0.7 0.292467
Target:  5'- cGcGCCuUCGCCGGCGCGCa-UUGCCu -3'
miRNA:   3'- aCuUGG-AGUGGCCGUGUGgcAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37825 0.67 0.426789
Target:  5'- --cGCCUCgACCGGgACGCCGcCGUa- -3'
miRNA:   3'- acuUGGAG-UGGCCgUGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 37777 0.67 0.455765
Target:  5'- cUGcGCCUCGgCGGCuuGCUG-CGCCu -3'
miRNA:   3'- -ACuUGGAGUgGCCGugUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37715 0.69 0.322688
Target:  5'- aGAuCCUugaucgCGCCGGCGgcCACCGgCGCCGc -3'
miRNA:   3'- aCUuGGA------GUGGCCGU--GUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37570 0.73 0.195599
Target:  5'- -cGGCCUCGCCGGCuggcgucagcuucccGCGCuCGUCGCa- -3'
miRNA:   3'- acUUGGAGUGGCCG---------------UGUG-GCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 37333 0.68 0.363656
Target:  5'- aGcGCCggCACUGGCAU-CgGUCGCCGc -3'
miRNA:   3'- aCuUGGa-GUGGCCGUGuGgCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37197 0.68 0.355181
Target:  5'- -cAGCaUCAgCGGCGCGCCGaCGUCGg -3'
miRNA:   3'- acUUGgAGUgGCCGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37107 0.69 0.307294
Target:  5'- -cAGCCUCGgCGaucGCGCgGCCGUCGCCc -3'
miRNA:   3'- acUUGGAGUgGC---CGUG-UGGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 36954 0.68 0.363656
Target:  5'- --cGCC-CGCCGGUuCACCGgucgCGCUGg -3'
miRNA:   3'- acuUGGaGUGGCCGuGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 36418 0.69 0.346846
Target:  5'- cGAucACCUCGCCcGaCACACCGaacuugcgcaUCGCCu -3'
miRNA:   3'- aCU--UGGAGUGGcC-GUGUGGC----------AGCGGc -5'
28052 5' -58.3 NC_005887.1 + 34916 0.68 0.398026
Target:  5'- gGAACgUCGCgCuGUGCggaacuuGCCGUCGCCGg -3'
miRNA:   3'- aCUUGgAGUG-GcCGUG-------UGGCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.