miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 14303 0.67 0.445987
Target:  5'- cUGAACC-CGCaagcGCAgGCCGaCGCCGa -3'
miRNA:   3'- -ACUUGGaGUGgc--CGUgUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8966 0.67 0.445987
Target:  5'- aUGAGCCUCAuCCuGCcCGCCGgCGCg- -3'
miRNA:   3'- -ACUUGGAGU-GGcCGuGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 25951 0.67 0.445987
Target:  5'- gUGAGCUUCcgGCCGGCG-GCCGUC-UCGa -3'
miRNA:   3'- -ACUUGGAG--UGGCCGUgUGGCAGcGGC- -5'
28052 5' -58.3 NC_005887.1 + 12068 0.67 0.436327
Target:  5'- cGAACgUCguGCgCGGCACgAUCGUcgCGCCGg -3'
miRNA:   3'- aCUUGgAG--UG-GCCGUG-UGGCA--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8578 0.67 0.436327
Target:  5'- gUGGAag-C-CCGGCACGCCG-CGCCn -3'
miRNA:   3'- -ACUUggaGuGGCCGUGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 37825 0.67 0.426789
Target:  5'- --cGCCUCgACCGGgACGCCGcCGUa- -3'
miRNA:   3'- acuUGGAG-UGGCCgUGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 21094 0.67 0.426789
Target:  5'- uUGAACggUAUCGGCGCG--GUCGCCGc -3'
miRNA:   3'- -ACUUGgaGUGGCCGUGUggCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 21302 0.67 0.426789
Target:  5'- --cGCCcacauUCACgGGCACGCCcaccgCGCCGa -3'
miRNA:   3'- acuUGG-----AGUGgCCGUGUGGca---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40270 0.67 0.426789
Target:  5'- cGggUg-CACCGGCuuGCCGUCGaCGa -3'
miRNA:   3'- aCuuGgaGUGGCCGugUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 25004 0.67 0.425842
Target:  5'- cGAGCgUCagcucgcGCCGGCGgcCGCCGgccaGCCGg -3'
miRNA:   3'- aCUUGgAG-------UGGCCGU--GUGGCag--CGGC- -5'
28052 5' -58.3 NC_005887.1 + 16128 0.67 0.421126
Target:  5'- cGGACC-CgugcgccagcugcagGCCGGC-CACCGcCGCCc -3'
miRNA:   3'- aCUUGGaG---------------UGGCCGuGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 33210 0.67 0.417375
Target:  5'- aUGAACgCgccgCACUGGCAC-UCGgucgCGCCGu -3'
miRNA:   3'- -ACUUG-Ga---GUGGCCGUGuGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 27025 0.67 0.417375
Target:  5'- cGcAACCUCggcgagcgcgcgACCGcGCACGCUGcCGCCc -3'
miRNA:   3'- aC-UUGGAG------------UGGC-CGUGUGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 24713 0.67 0.417375
Target:  5'- cUGcAGCUUCACgGcGCugACCGUCGUg- -3'
miRNA:   3'- -AC-UUGGAGUGgC-CGugUGGCAGCGgc -5'
28052 5' -58.3 NC_005887.1 + 17467 0.67 0.417375
Target:  5'- -aGACCgagCGCgCGGCAUcgGCCGcCGCCu -3'
miRNA:   3'- acUUGGa--GUG-GCCGUG--UGGCaGCGGc -5'
28052 5' -58.3 NC_005887.1 + 26913 0.67 0.417375
Target:  5'- cUGcGCCcgagUCGCUGGC-CGCCGUCGaCGa -3'
miRNA:   3'- -ACuUGG----AGUGGCCGuGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 40852 0.67 0.408089
Target:  5'- cGGAUC-CACCGGCGaagcCGCCGcgcgCGUCGa -3'
miRNA:   3'- aCUUGGaGUGGCCGU----GUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 6318 0.67 0.408089
Target:  5'- uUGcGCCUCGCCGGCGCcgaGgUGaCGCUGc -3'
miRNA:   3'- -ACuUGGAGUGGCCGUG---UgGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 30201 0.68 0.398934
Target:  5'- ---uUCUCGCCGGCcagccACGCCG-CGUCGc -3'
miRNA:   3'- acuuGGAGUGGCCG-----UGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 11715 0.68 0.398934
Target:  5'- aGAucGCUUCGCCGcGCGCACgGcgCGCaCGa -3'
miRNA:   3'- aCU--UGGAGUGGC-CGUGUGgCa-GCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.