miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 22856 0.68 0.398934
Target:  5'- cGAugCUCGCCGGCaucgggaucaGCACuUGUUGaCCa -3'
miRNA:   3'- aCUugGAGUGGCCG----------UGUG-GCAGC-GGc -5'
28052 5' -58.3 NC_005887.1 + 30201 0.68 0.398934
Target:  5'- ---uUCUCGCCGGCcagccACGCCG-CGUCGc -3'
miRNA:   3'- acuuGGAGUGGCCG-----UGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 19095 0.68 0.398934
Target:  5'- cGAGCUgCGCCuuuuGCGCGCCGacCGCCGc -3'
miRNA:   3'- aCUUGGaGUGGc---CGUGUGGCa-GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 11715 0.68 0.398934
Target:  5'- aGAucGCUUCGCCGcGCGCACgGcgCGCaCGa -3'
miRNA:   3'- aCU--UGGAGUGGC-CGUGUGgCa-GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 34916 0.68 0.398026
Target:  5'- gGAACgUCGCgCuGUGCggaacuuGCCGUCGCCGg -3'
miRNA:   3'- aCUUGgAGUG-GcCGUG-------UGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 27993 0.68 0.389911
Target:  5'- cGAACaggugC-CCGGCACGCUGcuucacgaUCGCCGc -3'
miRNA:   3'- aCUUGga---GuGGCCGUGUGGC--------AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 15940 0.68 0.389911
Target:  5'- gGAAUCgaugCGCCGGCcacGCGCCGcaccCGCUGu -3'
miRNA:   3'- aCUUGGa---GUGGCCG---UGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 2962 0.68 0.389911
Target:  5'- cGAccauCCUCGCCGGCgacuccACGuCCGUCGUUc -3'
miRNA:   3'- aCUu---GGAGUGGCCG------UGU-GGCAGCGGc -5'
28052 5' -58.3 NC_005887.1 + 41390 0.68 0.389911
Target:  5'- cGAucACCUCguGCU-GCACGCCuUCGCCGa -3'
miRNA:   3'- aCU--UGGAG--UGGcCGUGUGGcAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 13035 0.68 0.381022
Target:  5'- cGAGCagaucCACaCGGC-CAgCGUCGCCGc -3'
miRNA:   3'- aCUUGga---GUG-GCCGuGUgGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 38222 0.68 0.381022
Target:  5'- aGAACC--ACUGGUugAUCGUCuGCCGc -3'
miRNA:   3'- aCUUGGagUGGCCGugUGGCAG-CGGC- -5'
28052 5' -58.3 NC_005887.1 + 40860 0.68 0.37227
Target:  5'- -cGGCCgCGCCGcgcgagcgccGCACGCCGUCGgCGu -3'
miRNA:   3'- acUUGGaGUGGC----------CGUGUGGCAGCgGC- -5'
28052 5' -58.3 NC_005887.1 + 36954 0.68 0.363656
Target:  5'- --cGCC-CGCCGGUuCACCGgucgCGCUGg -3'
miRNA:   3'- acuUGGaGUGGCCGuGUGGCa---GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 25489 0.68 0.363656
Target:  5'- cGAGCCguccgCGCCgcGGUACACC-UCGCgGa -3'
miRNA:   3'- aCUUGGa----GUGG--CCGUGUGGcAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 16147 0.68 0.363656
Target:  5'- --cGCCaacCACCGGCGCGCCGagUGCgCGa -3'
miRNA:   3'- acuUGGa--GUGGCCGUGUGGCa-GCG-GC- -5'
28052 5' -58.3 NC_005887.1 + 20049 0.68 0.363656
Target:  5'- cUGAACCacaaagUCACCcGCACAUCGg-GCCGu -3'
miRNA:   3'- -ACUUGG------AGUGGcCGUGUGGCagCGGC- -5'
28052 5' -58.3 NC_005887.1 + 37333 0.68 0.363656
Target:  5'- aGcGCCggCACUGGCAU-CgGUCGCCGc -3'
miRNA:   3'- aCuUGGa-GUGGCCGUGuGgCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 529 0.68 0.355181
Target:  5'- cUGAACgCgUCgGCCGccGCGCGCCG-CGCCGg -3'
miRNA:   3'- -ACUUG-G-AG-UGGC--CGUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 31302 0.68 0.355181
Target:  5'- -cGACCggCAUCGGCGCACCgGUgGUCa -3'
miRNA:   3'- acUUGGa-GUGGCCGUGUGG-CAgCGGc -5'
28052 5' -58.3 NC_005887.1 + 41281 0.68 0.355181
Target:  5'- -cGACCUgcgCACgGGCGCGCUGcugcCGCCGg -3'
miRNA:   3'- acUUGGA---GUGgCCGUGUGGCa---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.