Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 26466 | 0.66 | 0.69406 |
Target: 5'- cGCGU-CgaGCGCACCGagcUGcUGGuGCGCc -3' miRNA: 3'- -CGCAcGa-CGUGUGGU---ACuACCuCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 28327 | 0.66 | 0.671631 |
Target: 5'- uGCGccgGCgGCGCGCCGgcgGuugcGGAGgCGCg -3' miRNA: 3'- -CGCa--CGaCGUGUGGUa--Cua--CCUC-GCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 38219 | 0.66 | 0.671631 |
Target: 5'- cGCGcGCagccuUGCGCgugGCCggGAUGGucgAGCGCu -3' miRNA: 3'- -CGCaCG-----ACGUG---UGGuaCUACC---UCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 5445 | 0.66 | 0.671631 |
Target: 5'- aCGUGUUcGUGaaaGCCGUGAUGGAugauGUGCc -3' miRNA: 3'- cGCACGA-CGUg--UGGUACUACCU----CGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 31457 | 0.66 | 0.671631 |
Target: 5'- uGCGccgGCUGCagguGCACCGacagGAUgugcucGGGGCGUa -3' miRNA: 3'- -CGCa--CGACG----UGUGGUa---CUA------CCUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 1830 | 0.66 | 0.660352 |
Target: 5'- cGC-UGCcGCGCGCCGcgUGGUGGA-UGCc -3' miRNA: 3'- -CGcACGaCGUGUGGU--ACUACCUcGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 14130 | 0.66 | 0.659222 |
Target: 5'- cGCGcGCUGCucaaaacCGCCGagacgcgcggcgcUGAUGcGGCGCa -3' miRNA: 3'- -CGCaCGACGu------GUGGU-------------ACUACcUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 26173 | 0.66 | 0.65357 |
Target: 5'- uCGUGUcGCGCGCgAUGAUcggguagaugaaaacGGGGCGg -3' miRNA: 3'- cGCACGaCGUGUGgUACUA---------------CCUCGCg -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 18952 | 0.66 | 0.637721 |
Target: 5'- cGCGcUGCUGCGgcUGCCAgc--GGcAGCGCg -3' miRNA: 3'- -CGC-ACGACGU--GUGGUacuaCC-UCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 22426 | 0.66 | 0.637721 |
Target: 5'- uCGUGCUGCuguuCugCAUG-UGGAuUGCc -3' miRNA: 3'- cGCACGACGu---GugGUACuACCUcGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 30900 | 0.67 | 0.625259 |
Target: 5'- cGCGaGCUGCGCGuugcgauCCAUGAUcgcGGccuguuGCGCu -3' miRNA: 3'- -CGCaCGACGUGU-------GGUACUA---CCu-----CGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 746 | 0.67 | 0.615068 |
Target: 5'- -gGUGCUGC-CGCCAUuGcUGGGGUaucggGCa -3' miRNA: 3'- cgCACGACGuGUGGUA-CuACCUCG-----CG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 41398 | 0.67 | 0.60376 |
Target: 5'- uCGUGCUGCACGCCuucgccGAagcacucGGGGCa- -3' miRNA: 3'- cGCACGACGUGUGGua----CUa------CCUCGcg -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 1014 | 0.67 | 0.60376 |
Target: 5'- cGCGcGCUGUACACCGgcuUGaAGCGg -3' miRNA: 3'- -CGCaCGACGUGUGGUacuACcUCGCg -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 37187 | 0.68 | 0.574505 |
Target: 5'- cGCGUGCcaucagcaucagcgGCGCGCCGacgucgGGcAGCGCg -3' miRNA: 3'- -CGCACGa-------------CGUGUGGUacua--CC-UCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 28087 | 0.68 | 0.57003 |
Target: 5'- ---cGCUGCAUGCCGUuuaccGGGGCGUg -3' miRNA: 3'- cgcaCGACGUGUGGUAcua--CCUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 7448 | 0.68 | 0.567796 |
Target: 5'- gGCGUGCgcgucgugaucgGCAUGCCGUucgcGAacGAGCGCu -3' miRNA: 3'- -CGCACGa-----------CGUGUGGUA----CUacCUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 23001 | 0.68 | 0.547796 |
Target: 5'- cGCGUcuGCUGCGCGagCAUGGUcagcuuaucGAGCGCc -3' miRNA: 3'- -CGCA--CGACGUGUg-GUACUAc--------CUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 29608 | 0.68 | 0.53678 |
Target: 5'- cGCGuUGCaGCGCGgCGcGAUcGAGCGCa -3' miRNA: 3'- -CGC-ACGaCGUGUgGUaCUAcCUCGCG- -5' |
|||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 40143 | 0.69 | 0.503158 |
Target: 5'- uGCGcGCUGCGCGCCGcgcucgccgcgugUGAgcu-GCGCg -3' miRNA: 3'- -CGCaCGACGUGUGGU-------------ACUaccuCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home