Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28054 | 3' | -54 | NC_005887.1 | + | 42027 | 0.67 | 0.677343 |
Target: 5'- cGCGGCGcGCGauGCGUacaaGgCGGACAUGGa -3' miRNA: 3'- -UGCCGUaCGU--CGCAc---UgGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 39279 | 0.67 | 0.673976 |
Target: 5'- uCGGCGuucagcgccUGCAggaucuucGCGUcgucguucgucauuGGCCGAGCAUGGc -3' miRNA: 3'- uGCCGU---------ACGU--------CGCA--------------CUGGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38642 | 0.67 | 0.620937 |
Target: 5'- cGCGGUcgGC-GCGcGGCuCGAcgGCGUGGu -3' miRNA: 3'- -UGCCGuaCGuCGCaCUG-GCU--UGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38219 | 0.68 | 0.575928 |
Target: 5'- cGCGcGCAgccuUGC-GCGUGGCCGGG-AUGGu -3' miRNA: 3'- -UGC-CGU----ACGuCGCACUGGCUUgUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38180 | 0.7 | 0.457624 |
Target: 5'- gGCGGUGUGCAGCaUGGCCGGcuCAa-- -3' miRNA: 3'- -UGCCGUACGUCGcACUGGCUu-GUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38032 | 0.68 | 0.609644 |
Target: 5'- uGCGGCAUguccgGCAGC-UGGCCGGccucgGCGaGGa -3' miRNA: 3'- -UGCCGUA-----CGUCGcACUGGCU-----UGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 34984 | 0.69 | 0.531691 |
Target: 5'- cGCGGCGuugucgucggucUGCAGCGcGAUCGAAUAc-- -3' miRNA: 3'- -UGCCGU------------ACGUCGCaCUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 34938 | 0.69 | 0.553678 |
Target: 5'- -aGGCG-GCGGCGgGugCGAcCGUGGc -3' miRNA: 3'- ugCCGUaCGUCGCaCugGCUuGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 32421 | 0.66 | 0.721717 |
Target: 5'- gUGGCcgGCGGCGaugUGGCCGGcgGCGa-- -3' miRNA: 3'- uGCCGuaCGUCGC---ACUGGCU--UGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 31912 | 0.7 | 0.467881 |
Target: 5'- -aGGCAUGCugcuGCaaGAuCCGGGCGUGGu -3' miRNA: 3'- ugCCGUACGu---CGcaCU-GGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 30338 | 0.71 | 0.398772 |
Target: 5'- aGCGGCGUGCGuGCGccggaUGuCUGcAACGUGGg -3' miRNA: 3'- -UGCCGUACGU-CGC-----ACuGGC-UUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 29021 | 0.68 | 0.609644 |
Target: 5'- cGCGGCGagauccgcgaUGCggccGGCGUuGCCGAACGccUGGc -3' miRNA: 3'- -UGCCGU----------ACG----UCGCAcUGGCUUGU--ACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 28038 | 0.7 | 0.457624 |
Target: 5'- cACuGCGU-CGGCGUGAUCGAGCA-GGc -3' miRNA: 3'- -UGcCGUAcGUCGCACUGGCUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26901 | 0.7 | 0.478255 |
Target: 5'- cGCGGuCAUcGCGGCGacgucguccgguUGACCGAACAc-- -3' miRNA: 3'- -UGCC-GUA-CGUCGC------------ACUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26401 | 0.79 | 0.134395 |
Target: 5'- aGCGGCGUGCGgcGCGUGGCCGGcGCAUc- -3' miRNA: 3'- -UGCCGUACGU--CGCACUGGCU-UGUAcc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26204 | 0.66 | 0.721717 |
Target: 5'- aACGGg--GCGGCgGUGGCCGGccuGCAgcUGGc -3' miRNA: 3'- -UGCCguaCGUCG-CACUGGCU---UGU--ACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 25289 | 0.67 | 0.654836 |
Target: 5'- aGCGGCAUGaCGGCGUccGcCCaAGCGUGc -3' miRNA: 3'- -UGCCGUAC-GUCGCA--CuGGcUUGUACc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 24618 | 0.66 | 0.699668 |
Target: 5'- uGCGGCc-GCAcGCGUGGUCGAACAg-- -3' miRNA: 3'- -UGCCGuaCGU-CGCACUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 24110 | 0.66 | 0.710733 |
Target: 5'- gACGGUGccCGGCGUGGCCGAGgCGa-- -3' miRNA: 3'- -UGCCGUacGUCGCACUGGCUU-GUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 21035 | 0.67 | 0.632241 |
Target: 5'- uGCGGUcgGCgcggugGGCGUGcCCguGAAUGUGGg -3' miRNA: 3'- -UGCCGuaCG------UCGCACuGG--CUUGUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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